Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30488
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0482 + 8798931-8799024,8799118-8799253,8799435-8799506,879... 31 0.42
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 30 0.96
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640... 29 2.2
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 29 2.9
03_04_0117 + 17411064-17411955,17412111-17413543 28 3.9
06_03_1177 + 28174909-28175016,28176386-28176484,28177188-281772... 28 5.1
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 28 5.1
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 27 6.8
10_08_0918 - 21560635-21560795,21560847-21560935,21561696-215617... 27 8.9
08_02_1448 - 27168389-27172021 27 8.9
01_05_0269 + 20258338-20258536,20258570-20258727,20258777-202588... 27 8.9
>03_02_0482 +
8798931-8799024,8799118-8799253,8799435-8799506,
8799583-8799654,8799798-8799869,8800133-8800204,
8800530-8800627,8800892-8801062,8801141-8801473,
8802494-8802739,8802884-8803017,8803132-8803344
Length = 570
Score = 31.5 bits (68), Expect = 0.42
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +2
Query: 95 KIRLPSGDEMPVRQNNMVVATKDNLKMKQMMDDVEMMIREGILT-GKIERRDGTVISLKK 271
++ L G + + ++ +TK+ LK + MDD ++ G T K+ DG V +LK+
Sbjct: 257 RVELCGGSSIVMFHGDLPYSTKEILKKLETMDDENIIGVGGFGTVYKLAMDDGNVFALKR 316
Query: 272 -SEDIENLARLVLGGLEIVGDDAKVIHLTNL 361
+ E L + LEI+G K +L NL
Sbjct: 317 IMKTNEGLGQFFDRELEILG-SVKHRYLVNL 346
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 30.3 bits (65), Expect = 0.96
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 434 TCPRKSARRCTCPCCIGH 381
TCPR +AR C+ PC GH
Sbjct: 47 TCPRCNARYCSLPCYKGH 64
>01_06_0733 -
31563246-31563462,31563721-31563947,31563983-31564018,
31564750-31564862,31565872-31565950,31566739-31566956,
31567041-31567146,31568518-31568730
Length = 402
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 430 HVHYLSPRSCLLDDHETSLQHLHRFQEH 513
HVHY++P D E L LH F +H
Sbjct: 117 HVHYVAPSFWAWKDGERRLAKLHNFVDH 144
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Frame = +2
Query: 92 PKIRLPSGDEMPVRQNNMVVATKDNLKMKQMMDDVEMMIREGILTGKIERRDGTVISLKK 271
P++ S +++P ++V+ K+ ++ + IRE I+ G+I +R G + L++
Sbjct: 1029 PQVEYVSIEDIP---ESVVIKEKEIEMQREDLQSKPENIREKIVEGRISKRLGVLALLEQ 1085
Query: 272 ---SEDIENLARLVLGGLEIVGDDAKVIHLT 355
+D + + LV + +G++ KV T
Sbjct: 1086 PFIKDDSKTVKDLVKETIATLGENIKVRRFT 1116
>03_04_0117 + 17411064-17411955,17412111-17413543
Length = 774
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/73 (21%), Positives = 36/73 (49%)
Frame = +2
Query: 200 MMIREGILTGKIERRDGTVISLKKSEDIENLARLVLGGLEIVGDDAKVIHLTNLMKKMLS 379
+++R +L G +E + SL +NL +L LGG ++ DD +++ + +
Sbjct: 708 LLLRSLLLYGSLEALPSWMASL------DNLVKLTLGGTKLEEDDIQILQKLPRLFSLRL 761
Query: 380 YGQYNMDKYTYVP 418
+ + ++K+ P
Sbjct: 762 WFAFAVEKFVVAP 774
>06_03_1177 +
28174909-28175016,28176386-28176484,28177188-28177238,
28177394-28177517,28177765-28177883,28177954-28178055,
28178124-28178198,28178390-28178466,28178920-28179169,
28179311-28179664,28179807-28179941,28180097-28180225
Length = 540
Score = 27.9 bits (59), Expect = 5.1
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = -3
Query: 304 DQTGEVFNVLRLLQAYNSAVTTLDLSSKDTLSDHHFNIIXXXXXLEVIF-----RGNDHV 140
D+ G LRLL Y S + TLDL +D H +E+ F N +
Sbjct: 340 DKLGMQVVPLRLLTPYESKLFTLDLLKSMDPNDPHNKKNRGKLVVELTFDPFRDDSNSTI 399
Query: 139 VLADGHFITAGKTDFRPVTGL 77
+++DG + K D P GL
Sbjct: 400 LMSDGEGNVSVKRDVPPSGGL 420
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 302 VLGGLEIVGDDAKVIHLTNLMKKMLSYGQYNMDKYTYVPTSLDMYTTCLRDPVF--WMIM 475
V+ +E VG + K + ++M+SY + TY+P +++ C+R+P F W +
Sbjct: 138 VVREIEAVGGNVKA----SANREMMSYSYAALK--TYMPEMVEVLIDCVRNPAFLDWEVK 191
Query: 476 KRVCNI 493
+++ +
Sbjct: 192 EQIMKL 197
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 370 FLHQVGQVDNFSIVANNF*ATEDQTGEVFNVL 275
FLH +G D +VA NF + + FN++
Sbjct: 87 FLHTIGHNDRNRVVATNFYRSSETVSRYFNLV 118
>10_08_0918 -
21560635-21560795,21560847-21560935,21561696-21561760,
21561841-21561892,21562271-21562356,21562457-21562626,
21562748-21562831,21563284-21563354,21563461-21563621
Length = 312
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 340 SYPLDQLDEENAELWPIQHGQVHLRADFLGHVHYLSPRSCLLDDHETSLQH 492
SYPL + +W +Q + + A ++ +H S L DH S H
Sbjct: 235 SYPLLNMTTLWTSIWAVQADDLLIEATYMSILHIRDYMSLLSLDHAISCLH 285
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 382 WPIQH--GQVHLRADFLGHVHYLSPRSCLLDDHETSLQHLHR 501
WP + +HLR ++ H H L + ++ SL HL R
Sbjct: 1028 WPTEELTSLIHLRHLYIEHCHRLEGKGSSSEEKFMSLSHLER 1069
>01_05_0269 +
20258338-20258536,20258570-20258727,20258777-20258899,
20259176-20259310,20259380-20259479,20259572-20259945,
20259994-20260143
Length = 412
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 65 NEPLETGYWPKIR-LPSGDEMPVRQNNMVVATKDNLKMKQMMDDVEMMIREGILTGKIER 241
N PLETG +R P GD+ P++ N + +D M + + +E++ E + + +
Sbjct: 332 NTPLETGMIDNVRSTPGGDKGPIQTNR---SGEDQDLMDEDLRQLEVIAGEEKIQTRTDD 388
Query: 242 RDGTVISLKK 271
+G S K
Sbjct: 389 AEGFTQSRTK 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,483,529
Number of Sequences: 37544
Number of extensions: 265333
Number of successful extensions: 711
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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