Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30488
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17227| Best HMM Match : KE2 (HMM E-Value=4.1)                       29   1.7  
SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)                   28   5.3  
SB_25689| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_17227| Best HMM Match : KE2 (HMM E-Value=4.1)
          Length = 162

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 63  GTSP*RPVTGLKSVFPAVMKCPSARTTWSLPRK 161
           G  P + + GLK   P   KCPS+R T SLP K
Sbjct: 14  GAEPSKNLPGLKPS-PKKRKCPSSRRTVSLPPK 45


>SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 484 NSFHDHPEDRIAETGSVHVQGSRHVGVLVHVVLAI 380
           ++ H HPED + + GSV++        L   V+A+
Sbjct: 56  STHHQHPEDLVYDAGSVYLGTKTSPASLARAVMAV 90


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/125 (16%), Positives = 55/125 (44%)
 Frame = +2

Query: 32   HKMCDVKPMMWNEPLETGYWPKIRLPSGDEMPVRQNNMVVATKDNLKMKQMMDDVEMMIR 211
            ++ C +  +M N+ ++  +W ++   +G +  V   N ++       + +  +D+E +  
Sbjct: 1456 NECCPLLELMANKAMKERHWERLSNLTGHKFDVENENFLLRNIMEAPLLKHKEDIEDICI 1515

Query: 212  EGILTGKIERRDGTVISLKKSEDIENLARLVLGGLEIVGDDAKVIHLTNLMKKMLSYGQY 391
              +    IE +   V++  KS++    +    G L + G +   I ++ L   ++  G  
Sbjct: 1516 SAVKEKDIEAKLSQVVADWKSQEFSFASFKNRGELLLKGGETTEI-VSLLEDSLMVLGSL 1574

Query: 392  NMDKY 406
              ++Y
Sbjct: 1575 LSNRY 1579


>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
          Length = 292

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 349 LDQLDEENAELWPIQHGQVHLRADFLGHV 435
           L  LD   A +WP++H Q+H R  ++  V
Sbjct: 118 LISLDRMFATVWPLRHRQIHPRMYYISSV 146


>SB_25689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 20  ERLSHKMCDVKPMMWNEPLETGYWPKIRLPSGDEMP 127
           E +   MC  KP     P  TG+ P I     D++P
Sbjct: 289 EAVEKAMCSAKPGKCPPPFSTGFCPDITDVPSDQVP 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,385,320
Number of Sequences: 59808
Number of extensions: 292631
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)