Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30488
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26200.1 68415.m03146 expressed protein                             31   0.46 
At4g30150.1 68417.m04287 expressed protein                             27   9.9  
At3g57350.1 68416.m06384 nucleoporin interacting component-relat...    27   9.9  
At3g42110.1 68416.m04323 hypothetical protein                          27   9.9  
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    27   9.9  
At2g04030.2 68415.m00372 heat shock protein, putative strong sim...    27   9.9  
At2g04030.1 68415.m00371 heat shock protein, putative strong sim...    27   9.9  

>At2g26200.1 68415.m03146 expressed protein
          Length = 565

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 131 RQNNMVVATKDNLKMKQMMDDVEMMIREGILTGKIERRDGTVISLKKSEDIENLARLVLG 310
           R  N+VVAT  + K   ++ +   M  +  L GK++    +V+     E IE++ RL   
Sbjct: 397 RSANLVVATDADTKALTLLTENITMNLQSSLLGKLKT---SVLEWGNKEHIESIKRLACE 453

Query: 311 GLEIV-GDDAKVI 346
           G E++ G D   +
Sbjct: 454 GFEVIMGTDVTYV 466


>At4g30150.1 68417.m04287 expressed protein
          Length = 2009

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -3

Query: 457  RIAETGSVHVQGSRHVGVLVHVVLAIAQHFLHQVGQVDNFSIVANNF*ATEDQTGEVFNV 278
            RIA   ++    S HV   +H+  AI   +LH       FS++  N  + +DQ  ++   
Sbjct: 1780 RIAGKHALFRMDSSHVSQSIHIPGAIFLDYLHATRV--GFSVLDGNLLSKDDQQQDLLGC 1837

Query: 277  LRLLQ 263
             + LQ
Sbjct: 1838 SKELQ 1842


>At3g57350.1 68416.m06384 nucleoporin interacting component-related
           contains weak hit to Pfam profile PF04097: Nucleoporin
           interacting component
          Length = 875

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 502 NGEDVANSFHDHPEDRIAETGSV 434
           +G D+ NS+  HP+ R   TGSV
Sbjct: 725 SGNDILNSYKYHPDVREVLTGSV 747


>At3g42110.1 68416.m04323 hypothetical protein
          Length = 448

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 498 VKMLQTRFMIIQKTGSRRQVVYMSKEVGT*VYLSMLYWP 382
           VK+L +     QKTG   ++++  +++ T  Y    +WP
Sbjct: 22  VKVLHSWKQYTQKTGETLELIFSDEQIFTLNYAGGQFWP 60


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
           MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
           thaliana]
          Length = 1294

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 274 RLLQAYNSAVTTLDLSSKDTLSD 206
           +L+ A+N AVT L L+S ++L D
Sbjct: 647 QLVNAHNDAVTVLPLASNESLGD 669


>At2g04030.2 68415.m00372 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 777

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 136 LADGHFITAGKTDFRPVTGL*GLVPHHRLNVTH 38
           LA  HF T G+ +FR +  + G+ P +  +VT+
Sbjct: 363 LAHTHFTTEGEVEFRSILYIPGMGPLNNEDVTN 395


>At2g04030.1 68415.m00371 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 780

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 136 LADGHFITAGKTDFRPVTGL*GLVPHHRLNVTH 38
           LA  HF T G+ +FR +  + G+ P +  +VT+
Sbjct: 363 LAHTHFTTEGEVEFRSILYIPGMGPLNNEDVTN 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,708,845
Number of Sequences: 28952
Number of extensions: 207265
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)