Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30486
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   2.2  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   5.1  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   8.9  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    25   8.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   8.9  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 308 KLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRN 436
           +++L+  + +  I NK     LK +LK E+K T + + V LRN
Sbjct: 223 EVYLKEVLDSIAILNKRGPYALKYSLKPEYKGTMDAASVELRN 265


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 235 ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 128
           A G+AP T K P   R +  +       LP T   V
Sbjct: 40  AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 483 TYAREK-TMNLSVRSFEFRRFTPERFHVLLNSLFKVLFNFPSRYLFAIGLAVIFSLRWSL 307
           T+  EK T+N  V S  +  F  E   +L+ S  K     P   L   GLA++++ RW  
Sbjct: 183 TFQDEKITLNSVVNSISYSSFFEE---LLITSYAK-----PKEALRTRGLAIVWNQRWKN 234

Query: 306 PP 301
            P
Sbjct: 235 SP 236


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 338 RPIANKYREGKLKRTLKREFKST*NRSGVNLRNSNERTERFIVFSR 475
           R +  K  E K KRT K +FK+   ++ +   N +   E +  F R
Sbjct: 234 RELKKKKAESKRKRTSKPDFKNDVQQNVIEENNESSDNE-YATFDR 278


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 18/65 (27%), Positives = 24/65 (36%)
 Frame = -2

Query: 365 PHGTCSLSVSRSYLALDGVYHPLRAALSSNPTLRSVPLAATLRRYGPGTLYGKTAPFKTN 186
           P G+   S S S         P +A + SNP   +V + +      P T     AP  T 
Sbjct: 140 PSGSVPPSASVSRANSTATTTPHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAPVSTT 199

Query: 185 LDRSR 171
              SR
Sbjct: 200 ATPSR 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,276
Number of Sequences: 5004
Number of extensions: 37350
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)