Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30486
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 3.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 3.4
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr... 27 6.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 6.0
Z81112-3|CAB03273.1| 656|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z70037-3|CAC42352.1| 902|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z70037-2|CAA93879.2| 906|Caenorhabditis elegans Hypothetical pr... 27 8.0
D84668-1|BAA86913.1| 902|Caenorhabditis elegans CLH-1 protein. 27 8.0
AF173170-1|AAF13163.1| 868|Caenorhabditis elegans CLC chloride ... 27 8.0
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 310 TPSKAKYDRETDSEQVP*GKVEKNFEERVQEYVKPFRGKPAKL 438
T K K+ + DS + VE+ EE+V + +K RGK KL
Sbjct: 11655 TSKKDKFGKRQDSREAS-ATVEQQGEEKVTKNLKGSRGKKEKL 11696
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 278 NPTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEK 159
N L SVP ++L P TL A K++L + DEK
Sbjct: 2586 NVELHSVPSLSSLVEVNPNTLMQTLASEKSSLKAAEEDEK 2625
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 310 TPSKAKYDRETDSEQVP*GKVEKNFEERVQEYVKPFRGKPAKL 438
T K K+ + DS + VE+ EE+V + +K RGK KL
Sbjct: 11655 TSKKDKFGKRQDSREAS-ATVEQQGEEKVTKNLKGSRGKKEKL 11696
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 278 NPTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEK 159
N L SVP ++L P TL A K++L + DEK
Sbjct: 2586 NVELHSVPSLSSLVEVNPNTLMQTLASEKSSLKAAEEDEK 2625
>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
protein C32E12.4 protein.
Length = 1553
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 275 PTLR--SVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYR 123
PT R SV ++T RY P T+ + +L R R + + ++ ++YR
Sbjct: 96 PTSRADSVSSSSTFSRYRPDNSVSSTSTYTPSLSRYRSTDLSSTSDYSSTKYR 148
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 278 NPTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEK 159
N L SVP ++L P TL A K++L + DEK
Sbjct: 2586 NVELHSVPSLSSLVEVNPNTLMQTLASEKSSLKAAEEDEK 2625
>Z81112-3|CAB03273.1| 656|Caenorhabditis elegans Hypothetical
protein T02B5.3 protein.
Length = 656
Score = 27.1 bits (57), Expect = 8.0
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -3
Query: 208 KRPRSRRTWTGVVATRK 158
++PR ++TW+GV+ T+K
Sbjct: 64 RKPRPQKTWSGVLETKK 80
>Z70037-3|CAC42352.1| 902|Caenorhabditis elegans Hypothetical
protein T27D12.2b protein.
Length = 902
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 329 YLALDGVYHPLRAALSSNPTLRSVPLAATLRRYGPGTLYGKTA 201
Y+ + Y LR L +PTLRS P R TL G A
Sbjct: 630 YITRETTYRELREMLLESPTLRSYPFVTDSRSM---TLLGSVA 669
>Z70037-2|CAA93879.2| 906|Caenorhabditis elegans Hypothetical
protein T27D12.2a protein.
Length = 906
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 329 YLALDGVYHPLRAALSSNPTLRSVPLAATLRRYGPGTLYGKTA 201
Y+ + Y LR L +PTLRS P R TL G A
Sbjct: 630 YITRETTYRELREMLLESPTLRSYPFVTDSRSM---TLLGSVA 669
>D84668-1|BAA86913.1| 902|Caenorhabditis elegans CLH-1 protein.
Length = 902
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 329 YLALDGVYHPLRAALSSNPTLRSVPLAATLRRYGPGTLYGKTA 201
Y+ + Y LR L +PTLRS P R TL G A
Sbjct: 630 YITRETTYRELREMLLESPTLRSYPFVTDSRSM---TLLGSVA 669
>AF173170-1|AAF13163.1| 868|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 868
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 329 YLALDGVYHPLRAALSSNPTLRSVPLAATLRRYGPGTLYGKTA 201
Y+ + Y LR L +PTLRS P R TL G A
Sbjct: 592 YITRETTYRELREMLLESPTLRSYPFVTDSRSM---TLLGSVA 631
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,733,747
Number of Sequences: 27780
Number of extensions: 211449
Number of successful extensions: 627
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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