Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30486
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42080.1 68414.m04853 hypothetical protein contains similarit...    31   0.46 
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    28   3.2  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    27   5.7  
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P...    27   7.5  
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P...    27   9.9  
At3g59620.1 68416.m06652 hypothetical protein                          27   9.9  
At3g47750.1 68416.m05202 ABC transporter family protein probable...    27   9.9  

>At1g42080.1 68414.m04853 hypothetical protein contains similarity
           to cytochrome P450 (rapN) GI:987088 from [Streptomyces
           hygroscopicus]
          Length = 151

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 381 VLFNFPSRY---LFAIGLAVIFSLRWSLPPA*GCTLKQPDSKERPSRRDPPSLR 229
           +LF  P R    L  IG ++ FSL+   PP     L  P+    PS  DPP LR
Sbjct: 81  ILFTHPKRREKKLSLIGGSLAFSLKIEYPPLDPVRLLTPEDLSHPS--DPPDLR 132


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1463

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 253 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 122
           S  P  +   AP TGK+P  R +  G   TRK +     S  +D
Sbjct: 376 SREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 132 PLSIKTTGFSAGLYSCSLAATKEIL 58
           P+S+  +GF   LYSC    T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692


>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
           At1g25886, At4g03300
          Length = 1139

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 253 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 122
           S  P ++   AP T K+P  R +  G   TRK +     S  +D
Sbjct: 512 SREPPISMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 555


>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At4g05280, At1g25886
          Length = 1285

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 253 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 122
           S +P  +   AP T K+P  R +  G   TRK +     S  +D
Sbjct: 608 SRKPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 651


>At3g59620.1 68416.m06652 hypothetical protein
          Length = 120

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 171 TTPVQVRLERGRFPVEGAR 227
           T P Q   E GR PVEGAR
Sbjct: 62  TEPFQFDREHGRVPVEGAR 80


>At3g47750.1 68416.m05202 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 944

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 259 SLSPRPSVATGLAPSTGKRPRSRRT-WTGVVATRK 158
           SL   P V     PSTG  P SRR+ WT +   +K
Sbjct: 774 SLIGSPKVVYMDEPSTGLDPASRRSLWTAIKGAKK 808


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,296,332
Number of Sequences: 28952
Number of extensions: 203694
Number of successful extensions: 572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)