Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30485
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   3.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.3  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    23   9.8  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    23   9.8  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 217 KTFQMNEYFWTRCWGLFG*LK 155
           + F+ +EY W  CW  +G L+
Sbjct: 56  RPFRQDEYSWNDCWMRWGQLR 76


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 296 FFFFFYLNVCIIIRIVSQIAWIL 228
           F FFF+L VC+ +  +  ++ +L
Sbjct: 155 FLFFFFLCVCVFLSFLFSLSHLL 177


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 82  GVTYAVTYVANEGGFQPSAPHIPKA*VNRT 171
           G  +A    +NE  F P  PH+PK    +T
Sbjct: 208 GGHFAAMIASNE--FNPRDPHVPKVLAQKT 235


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 234 PSDL*YDPDDNTYXXXXXXXXNSRGGPVPNS 326
           PSD  +D ++  Y         +R  PVP+S
Sbjct: 850 PSDKNFDREEEDYMRRHGKKNTNRADPVPSS 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,922
Number of Sequences: 5004
Number of extensions: 22018
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)