Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30485
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1048 + 10770461-10770612,10770721-10770730,10771457-107716...    27   2.9  
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565...    26   8.9  

>12_01_1048 +
           10770461-10770612,10770721-10770730,10771457-10771624,
           10771668-10772017,10772107-10772508,10772940-10773318,
           10773801-10774046
          Length = 568

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 150 GNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 49
           G   CRR +S  ++  GHS++ T    V  F +N
Sbjct: 174 GEACCRREKSQAIAGPGHSIAVTTSGAVYTFGSN 207


>03_05_0845 -
           28155065-28155374,28156201-28156342,28156375-28156505,
           28156591-28156784,28156859-28156969,28157234-28157399,
           28157501-28157668,28157766-28158787
          Length = 747

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 49  VRGEFAYIGPDGVTYAVTYVAN 114
           + G+  ++GPDG TY   + A+
Sbjct: 96  IEGQGVFVGPDGATYRGAWAAD 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,349,075
Number of Sequences: 37544
Number of extensions: 140077
Number of successful extensions: 284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)