Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30485
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    29   1.3  
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)               27   5.3  
SB_55822| Best HMM Match : BNR (HMM E-Value=5.8)                       27   5.3  
SB_24420| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_32698| Best HMM Match : RuvB_N (HMM E-Value=2.6)                    26   7.0  
SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_18146| Best HMM Match : Pkinase (HMM E-Value=0)                     26   9.2  

>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 147  NVRCRRLESTLVSDVGHSVSNTVRADVRKFSANLKSFVFS 28
            N+   R+   +  DV  S  NTV+ D++    +LKSFV S
Sbjct: 894  NLVALRIAGRVPQDVTGSTRNTVQKDIQGIEDSLKSFVES 933


>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1950

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 126 PAFGTSHSQGLSQPNRPQHLVQKY 197
           PA+ +S  +GL   NRPQ+ +Q Y
Sbjct: 397 PAYVSSIGKGLQVDNRPQNYLQTY 420


>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
          Length = 1084

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 308 PPRVFFFFFYLNVCIIIRIVSQIAWILI 225
           P   FFFFF + + III I+  I  I+I
Sbjct: 875 PTECFFFFFIIIIIIIIIIIIIIIIIII 902


>SB_55822| Best HMM Match : BNR (HMM E-Value=5.8)
          Length = 440

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 126 PAFGTSHSQGLSQPNRPQHLVQKY 197
           PA+ +S  +GL   NRPQ+ +Q Y
Sbjct: 256 PAYVSSIGKGLQVDNRPQNYLQTY 279


>SB_24420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 55  GEFAYIGPDGVTYAVTYVANEGG 123
           G + YIGP G+ +  T V    G
Sbjct: 255 GSYCYIGPQGIVHGTTIVVMNAG 277


>SB_32698| Best HMM Match : RuvB_N (HMM E-Value=2.6)
          Length = 157

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 276 KRMYYHQDRITDRLDSNNKRKLFK 205
           K++YY    I + +DSN K+K +K
Sbjct: 16  KKLYYATKEIVEIMDSNEKQKRWK 39


>SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 43  LEVRGEFAYIGPDGVTYAVTYVANEGGFQPSAPHIP 150
           +E+  +F  +GP  V Y  TY     G +PS    P
Sbjct: 268 MELDAQFVLVGPRLVRYGSTYPWTYSGTRPSGSTYP 303


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 122  DSSLRHLTFPRLKSTEQAPASSPKILIHLKSFRLLLESKR 241
            D +++ L  P L   E   A   K+  H K F+ LLESKR
Sbjct: 2876 DPTVQRLIAPLL---EDLAAGYSKLYRHQKGFKSLLESKR 2912


>SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1138

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 140 LTFPRLKSTEQAPASSPKILIHLKSFR-LLLESKRS 244
           L  P LK  E       KIL HL S   LLL+S+RS
Sbjct: 498 LPCPPLKPAEIMELPEEKILEHLSSIETLLLQSERS 533


>SB_18146| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 888

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 140 LTFPRLKSTEQAPASSPKILIHLKSFR-LLLESKRS 244
           L  P LK  E       KIL HL S   LLL+S+RS
Sbjct: 498 LPCPPLKPAEIMELPEEKILEHLSSIETLLLQSERS 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,498,160
Number of Sequences: 59808
Number of extensions: 169408
Number of successful extensions: 333
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)