Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30485
(342 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 33 0.054
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 33 0.054
AF016415-2|AAW88413.1| 296|Caenorhabditis elegans Serpentine re... 29 0.66
Z72512-4|CAA96666.1| 328|Caenorhabditis elegans Hypothetical pr... 27 4.7
U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchanger... 27 4.7
U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchanger... 27 4.7
U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchanger... 27 4.7
AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calciu... 27 4.7
Z82092-3|CAB05013.1| 638|Caenorhabditis elegans Hypothetical pr... 26 8.1
AL132952-7|CAB61139.2| 670|Caenorhabditis elegans Hypothetical ... 26 8.1
AL021471-3|CAA16297.1| 638|Caenorhabditis elegans Hypothetical ... 26 8.1
AF016415-4|AAW88419.1| 298|Caenorhabditis elegans Serpentine re... 26 8.1
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 33.1 bits (72), Expect = 0.054
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 332 IGRIGYRAPPRVFFFFFYLNVC 267
IG G+ APP VF FFF+L C
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYC 369
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 33.1 bits (72), Expect = 0.054
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 332 IGRIGYRAPPRVFFFFFYLNVC 267
IG G+ APP VF FFF+L C
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYC 367
>AF016415-2|AAW88413.1| 296|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 29 protein.
Length = 296
Score = 29.5 bits (63), Expect = 0.66
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = -2
Query: 302 RVFFFFFYLNVCIIIRIVSQIAWILITNEN 213
R+F++ F L+VC + ++S I+++L +EN
Sbjct: 42 RLFYYRFVLDVCFGLSLLSYISFLLFYSEN 71
>Z72512-4|CAA96666.1| 328|Caenorhabditis elegans Hypothetical
protein R07B5.6 protein.
Length = 328
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 299 VFFFFFYLNVCIII 258
+FFF FY N CI+I
Sbjct: 108 IFFFTFYFNYCILI 121
>U70857-3|AAN84873.1| 950|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformd protein.
Length = 950
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 73 GPDGVTYAVTYVANEGGFQPSAPHIP 150
GPDG+T V Y +G + +IP
Sbjct: 391 GPDGLTVMVDYFTEDGSANAGSDYIP 416
>U70857-2|AAM29660.1| 975|Caenorhabditis elegans Na/ca exchangers
protein 2, isoforma protein.
Length = 975
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 73 GPDGVTYAVTYVANEGGFQPSAPHIP 150
GPDG+T V Y +G + +IP
Sbjct: 391 GPDGLTVMVDYFTEDGSANAGSDYIP 416
>U70857-1|AAM29661.1| 925|Caenorhabditis elegans Na/ca exchangers
protein 2, isoformb protein.
Length = 925
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 73 GPDGVTYAVTYVANEGGFQPSAPHIP 150
GPDG+T V Y +G + +IP
Sbjct: 394 GPDGLTVMVDYFTEDGSANAGSDYIP 419
>AJ001181-1|CAA04574.1| 925|Caenorhabditis elegans sodium-calcium
exchanger protein.
Length = 925
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 73 GPDGVTYAVTYVANEGGFQPSAPHIP 150
GPDG+T V Y +G + +IP
Sbjct: 394 GPDGLTVMVDYFTEDGSANAGSDYIP 419
>Z82092-3|CAB05013.1| 638|Caenorhabditis elegans Hypothetical
protein ZK384.3 protein.
Length = 638
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 201 MSIFGLDAGACSVDLSLGNVRCRRLESTLVSDVGHS 94
++++G+DA ++LGN+ RR S V DVG++
Sbjct: 345 LAMYGIDASGFGPSVTLGNIFIRRYCS--VFDVGNA 378
>AL132952-7|CAB61139.2| 670|Caenorhabditis elegans Hypothetical
protein Y51H4A.7 protein.
Length = 670
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 55 GEFAYIGPDGVTYAVTY-VANEG 120
G F YIGP G+ + T V N G
Sbjct: 208 GSFCYIGPQGIVHGTTITVLNAG 230
>AL021471-3|CAA16297.1| 638|Caenorhabditis elegans Hypothetical
protein ZK384.3 protein.
Length = 638
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 201 MSIFGLDAGACSVDLSLGNVRCRRLESTLVSDVGHS 94
++++G+DA ++LGN+ RR S V DVG++
Sbjct: 345 LAMYGIDASGFGPSVTLGNIFIRRYCS--VFDVGNA 378
>AF016415-4|AAW88419.1| 298|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 31 protein.
Length = 298
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = -2
Query: 299 VFFFFFYLNVCIIIRIVSQIAWILITNE 216
+F++ F L++C + ++S I++ILI +E
Sbjct: 43 LFYYRFALDLCFGLALLSYISFILIFSE 70
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,036,128
Number of Sequences: 27780
Number of extensions: 123121
Number of successful extensions: 337
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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