Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30485
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26100.2 68416.m03250 regulator of chromosome condensation (R...    29   0.61 
At3g26100.1 68416.m03251 regulator of chromosome condensation (R...    29   0.61 
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi...    27   4.3  
At3g52710.1 68416.m05807 expressed protein predicted protein, Ar...    27   4.3  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    27   4.3  

>At3g26100.2 68416.m03250 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 532

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 159 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 49
           L  G   CRR +S  V+  GHSV+ T + +V  F  N
Sbjct: 134 LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYN 170


>At3g26100.1 68416.m03251 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 432

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 159 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 49
           L  G   CRR +S  V+  GHSV+ T + +V  F  N
Sbjct: 34  LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYN 70


>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 554

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 70  IGPDGVTYAVTYVANEGGFQPSAPHIPKA 156
           +G  G +   ++VA   GF+PS P  P A
Sbjct: 413 LGASGSSSGNSFVAPRSGFEPSIPSAPPA 441


>At3g52710.1 68416.m05807 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 289

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 158 KSTEQAPASSPKILIHLKSFRLLLESKRSVIR 253
           K    AP S+P    +  S R+ L+SK S+IR
Sbjct: 74  KGNSSAPISNPNTNPNSSSHRISLKSKASIIR 105


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 143  TFPRLKSTEQAPASSPKILIHLKS 214
            TFP+L+S+E A A  P ++  LKS
Sbjct: 1899 TFPKLRSSEAATACIPHLIGALKS 1922


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,606,166
Number of Sequences: 28952
Number of extensions: 115243
Number of successful extensions: 239
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)