Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30483
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    28   0.72 
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   1.3  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   2.9  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   3.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   3.8  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   5.1  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   8.9  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 358 GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 516
           G    ID++  +++KR    Y  ++  ++     LE  ++R + EISD  +++
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNEL 889


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 367 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 486
           +NI D++ED I ++   Y +  A   DE+   E+ +  KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 236 KPFFAFLALEASSMRLRTSARLRSISACL 150
           K FF  L  E+  +RL+T+  + S+  CL
Sbjct: 325 KAFFTLLESESMEIRLQTATTICSVIGCL 353


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 465 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 343
           + +++ + K +   M V  +PL S F+  +N LRF   + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 418 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 516
           +HE I +L+D + +L   +++K++ IS L   V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 388 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 516
           ED+ +    D+H   A  E+EK     + K   ME+ ++N  V
Sbjct: 23  EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHV 65


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 385 NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLN 507
           N++ IK   + Y ERI   ED+   L+ ++   + E  + N
Sbjct: 87  NDNDIKNFIRSYAERIVNNEDKNVFLDSLLLSPNYEYLEEN 127


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 417 VFANPLNSIFVGVVNVLRFTAPLLDDAPP 331
           VF  P+  +     N+ +FT P  + APP
Sbjct: 299 VFGKPIGDLTSDPTNLCKFTFPTPECAPP 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,771
Number of Sequences: 5004
Number of extensions: 20541
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)