Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30480
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   1.2  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   1.2  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   2.1  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   2.7  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   3.6  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    25   3.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   3.6  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    24   6.3  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    24   6.3  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    24   6.3  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    24   8.3  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 58  DAPDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 177
           D   +F D++ H K FH   E+  +   +  +K   D  K W
Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 52  RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT 141
           ++   DFFK +    ++ H TL ++ NSL+
Sbjct: 56  KKSEQDFFKMLSSRDRDAHSTLRKRSNSLS 85


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +1

Query: 19  ACIALAQGAMVRRDAPDFFKDIEHHTKEFH-----KTLEQQFNSLTKSKDAQDFSKAWKD 183
           A +A +Q    RR+    F D     K+ +     ++ +   + L  S D +DF K  K 
Sbjct: 499 AALAYSQSGKRRRNIQKIFYDESLSPKDAYAEYKGESAKSSESDLVVSDDEEDFFKVSKV 558

Query: 184 GSESVLATAQRLRQ 225
            +ES+ +  ++L +
Sbjct: 559 ANESISSNHEKLME 572


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 31  LAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDA 156
           L +   V R    F + +EH+     K+LE+Q + L +SKDA
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQSKDA 233


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 103 FHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLATAQRLR 222
           F K LEQ   S+  + + ++  + W    +SVL   Q LR
Sbjct: 269 FSKQLEQDSASMLPAFEGRETEQNWSVRQDSVLRLRQYLR 308


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 64  PDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLATAQRLRQ 225
           PD  K+ +  T    +  EQ+ +  + SKD    S   +  + S L   Q  RQ
Sbjct: 130 PDHSKETQEKTSSQRELFEQKSSVASASKDNVSSSSILQGSASSKLLPDQSARQ 183


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -2

Query: 285 VPKPPWPCRSRVSXSXPW---RLLAKALSCCQHG 193
           +  P    RS+V    P+   R+LA  L CC HG
Sbjct: 631 IQSPQRLSRSKVFRKDPYSCVRILALELFCCSHG 664


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
 Frame = +1

Query: 52  RRDAPDFFKDIEH----HTKEFHKTLEQQFNSLTK-SKDAQ---DFSKAWKDGSESVLAT 207
           + D PD+++ IEH     T EF +    Q+ S+ +  +DA+   D  +++ D + +    
Sbjct: 374 KEDVPDYYEVIEHPMDLSTMEF-RLRNNQYESVEEFIRDAKYIFDNCRSYNDSNTTYYKN 432

Query: 208 AQRLRQ 225
           A RL +
Sbjct: 433 ADRLEK 438


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 22  CIALAQGAMVRRDAPDFFKDIEHHTKEFH-KTLEQQFNSLTKSKDAQDFSKAWKDGSESV 198
           C  + +G  +RR  P +++ I      ++ KTL + FN+  + +++  + KA ++G   V
Sbjct: 13  CEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKAIRNGQVKV 72


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 264 KAKEALEQSRQNIERTAEE 320
           KAK  LEQ+R  +ERT  E
Sbjct: 407 KAKTELEQARIELERTQRE 425


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 279 LEQSRQNIERTAEELRKAHPDVXK 350
           +EQ+R   E T E++++A P++ K
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,768
Number of Sequences: 5004
Number of extensions: 22431
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)