Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30480
(364 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.65
SB_7773| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0024) 29 0.85
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_37125| Best HMM Match : DUF1542 (HMM E-Value=0.76) 29 1.1
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 27 3.4
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06) 27 3.4
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022) 27 4.6
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 27 6.0
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 26 8.0
SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_23958| Best HMM Match : FG-GAP (HMM E-Value=0.055) 26 8.0
SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08) 26 8.0
>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 29.9 bits (64), Expect = 0.65
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 324 GAPRPCARCSASTVPKPPWPCRSRVSXSXPWRLLAKALS 208
G PC+RC + P P + R + S WR LA ALS
Sbjct: 95 GQNNPCSRCGLLSCPTTTSPEKRRKTPS--WRTLAPALS 131
>SB_7773| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0024)
Length = 550
Score = 29.5 bits (63), Expect = 0.85
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 354 RSXRRQGGPCGAPRPCARCSASTV 283
+S +R+ GP GAP RCS ST+
Sbjct: 401 KSKKRRDGPPGAPPTQTRCSTSTI 424
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 76 KDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKD 183
+ IEH + K +QQF+S K+ D D S K+
Sbjct: 468 RSIEHKIQRLEKKFDQQFSSTEKNMDKNDSSLPKKE 503
>SB_37125| Best HMM Match : DUF1542 (HMM E-Value=0.76)
Length = 580
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 55 RDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLATAQRLRQESP 234
+DAP K+ + K+ + + F + +D++ KDG ES T ++ ESP
Sbjct: 485 QDAPAIVKEFFSYVKKLLEDVVAVFCEEDEEEDSKKNKDDEKDGKESAKKTTEKQDDESP 544
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 118 EQQFNSLTKSKDAQDFSKAWKDGSESVLATAQRLRQE 228
E++ +K+KDA+ + ++WK + L A R + +
Sbjct: 827 EKELEKRSKTKDAKKYFESWKSKKDEELKEAHRAKMQ 863
>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1925
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -2
Query: 357 WRSXRRQ-GGPCGAPRPCARCSASTVPKPPWPCRSRVSXSXPWRLLAKAL 211
W RQ G C A C AST PP P R + PW+ LA L
Sbjct: 1229 WEGIDRQVGQKCKACHGCQLVGAST---PPEPLRHTQFPTQPWKDLAADL 1275
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 264 KAKEALEQSRQNIERTAEELRKAH 335
KAKEAL + + ++ T E+L+ AH
Sbjct: 1829 KAKEALSKENKELKGTVEQLQDAH 1852
>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
Length = 925
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 345 RRQGGPCGAPRPCARCSASTV 283
+R+ GP GAP RCS ST+
Sbjct: 660 KRRDGPPGAPPTQTRCSTSTI 680
>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
Length = 664
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -2
Query: 354 RSXRRQGGPCGAPRPCARCSASTVPKPPWPCRSRVSXSXP 235
+ RRQG P A T P PP P RS + P
Sbjct: 461 KGERRQGAVAPPLPPLPTQGAVTTPLPPLPSRSTIGPLPP 500
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 249 THANGKAKEALEQSRQNIERTAEELRKAH 335
THA G KE + R N EE+R+ H
Sbjct: 2445 THALGLIKEVMVDKRVNGRPVGEEIRRLH 2473
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -2
Query: 342 RQGGPCGAPRPCARCSASTVP--KPPWPC 262
RQ GP G+ C CS +T P P PC
Sbjct: 951 RQTGPTGSALACYACSNATQPGEHPSIPC 979
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 27 RSGPRSDGATRRSRLLQGHRTPHQGVP 107
RS P + G TR +++ GH HQ VP
Sbjct: 189 RSYPVTPGFTRSYQVIPGHTRSHQVVP 215
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 58 DAPDFFKDIEHHTKEF-----HKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLATAQ 213
D DFFK++ TKEF K +L S D +DF + + S +++ T +
Sbjct: 1012 DITDFFKELGPATKEFAEESVKKVCAVYKFALNSSSDFKDFGENMESQSIAIMKTVK 1068
>SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 211 ELLPARTRSRPSKPC 167
EL+P++TRSR + PC
Sbjct: 53 ELVPSKTRSRSASPC 67
>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1167
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 79 DIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESV 198
DI H K F+ T + + K+ + QDF ++G++ +
Sbjct: 604 DITKHLKAFYITKAPEGHRYNKAPEGQDFDVPEENGTDEI 643
>SB_23958| Best HMM Match : FG-GAP (HMM E-Value=0.055)
Length = 683
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 161 SCASFDLVSELNCCSKVLWNSLVWCSMSL 75
S ASF+L+S +C K LW+S S+SL
Sbjct: 141 SKASFELMSLSSCDGKKLWSSKYNGSLSL 169
>SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)
Length = 1259
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 73 FKDIEHHTKEFHKTLEQQFN--SLTKSKDAQDFSKAWKD 183
F D E + +F LE +N +LT +KD +S +W D
Sbjct: 166 FSDEELNMVKFIHALEALYNQQNLTVAKDLSTYSTSWTD 204
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,686,884
Number of Sequences: 59808
Number of extensions: 200979
Number of successful extensions: 836
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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