Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30480
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   7.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   7.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 188 EPSFQALLKSCASFDLVSELN 126
           EP    +  + ASFD +SE+N
Sbjct: 59  EPLLVGMDLTIASFDAISEVN 79


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 102 LLGVVFDVLEEVGSVASHHRSL 37
           LLG +  VLE +   A   +SL
Sbjct: 848 LLGAIVPVLESIQQKAKRSKSL 869


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 102 LLGVVFDVLEEVGSVASHHRSL 37
           LLG +  VLE +   A   +SL
Sbjct: 886 LLGAIVPVLESIQQKAKRSKSL 907


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,639
Number of Sequences: 438
Number of extensions: 1924
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)