Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30480
(364 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07670.1 68414.m00824 calcium-transporting ATPase 4, endoplas... 31 0.23
At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplas... 30 0.40
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ... 28 1.6
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida... 28 1.6
At1g68910.1 68414.m07886 expressed protein similar to Myosin hea... 27 2.8
At1g33290.2 68414.m04118 sporulation protein-related isoform con... 27 2.8
At1g33290.1 68414.m04117 sporulation protein-related isoform con... 27 2.8
At5g45330.1 68418.m05564 expressed protein ; expression supporte... 27 3.7
At4g27630.2 68417.m03972 expressed protein 27 4.9
At4g27630.1 68417.m03971 expressed protein 27 4.9
At1g68060.1 68414.m07775 expressed protein 27 4.9
At1g24764.1 68414.m03106 expressed protein 27 4.9
At5g62170.1 68418.m07804 expressed protein various predicted pro... 26 6.5
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 26 6.5
At1g43690.1 68414.m05019 ubiquitin interaction motif-containing ... 26 6.5
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 26 8.6
At3g12360.1 68416.m01541 ankyrin repeat family protein contains ... 26 8.6
At1g64990.1 68414.m07366 expressed protein contains similarity t... 26 8.6
>At1g07670.1 68414.m00824 calcium-transporting ATPase 4, endoplasmic
reticulum-type (ECA4) identical to SP|Q9XES1
Calcium-transporting ATPase 4, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 775
Score = 31.1 bits (67), Expect = 0.23
Identities = 27/96 (28%), Positives = 46/96 (47%)
Frame = -2
Query: 291 STVPKPPWPCRSRVSXSXPWRLLAKALSCCQHGLGAVLPSLAEVLCVL*LGERVKLLF*S 112
S V PPW PW LLA A+S H + +P LA+V ++ L LL +
Sbjct: 688 SLVTMPPWV--------NPWLLLAMAVSFGLHFVILYVPFLAQVFGIVPLSLNEWLLVLA 739
Query: 111 LMELLGVVFDVLEEVGSVASHHRSLGQSDAGEENYE 4
+ + ++ +VL+ VG S +R ++ + ++ E
Sbjct: 740 VSLPVILIDEVLKFVGRCTSGYRYSPRTPSAKQKEE 775
>At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplasmic
reticulum-type (ECA1) identical to SP|P92939
Calcium-transporting ATPase 1, endoplasmic reticulum-type
(EC 3.6.3.8) {Arabidopsis thaliana); contains InterPro
Accession IPR006069: Cation transporting ATPase
Length = 1061
Score = 30.3 bits (65), Expect = 0.40
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = -2
Query: 291 STVPKPPWPCRSRVSXSXPWRLLAKALSCCQHGLGAVLPSLAEVLCVL*LGERVKLLF*S 112
S V PPW PW LLA A+S H + +P LA+V ++ L LL +
Sbjct: 974 SLVTMPPWV--------NPWLLLAMAVSFGLHFVILYVPFLAQVFGIVPLSLNEWLLVLA 1025
Query: 111 LMELLGVVFDVLEEVGSVASHHR 43
+ + ++ +VL+ VG S +R
Sbjct: 1026 VSLPVILIDEVLKFVGRCTSGYR 1048
>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 671
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 232 ETLGEGVELLPARTRSRP 179
ET+ +GVELLP T SRP
Sbjct: 601 ETIRDGVELLPNNTSSRP 618
>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
putative / ACC oxidase, putative nearly identical to ACC
oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
Length = 320
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 67 DFFKDIEHHTKEFHKTL-EQQFNSLTKSKDAQDFSKAWKD 183
D IE TK+ +KT EQ+FN + KSK + +D
Sbjct: 47 DLMDKIEKMTKDHYKTCQEQKFNDMLKSKGLDNLETEVED 86
>At1g68910.1 68414.m07886 expressed protein similar to Myosin heavy
chain, nonmuscle type B (Cellular myosin heavy chain,
type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B)
(Swiss-Prot:Q27991) [Bos taurus]; contains 1
transmembrane domain
Length = 627
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 252 HANGKAKEALEQSRQNIERTAEELRK 329
HA+G EAL +S Q ERT EE K
Sbjct: 565 HADGHEIEALAESLQEDERTREEPEK 590
>At1g33290.2 68414.m04118 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 303
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = -1
Query: 337 GWALRSSSAVRSMFCLDCSKASLALPFACVXKRSLETLGEGVELLPARTRSR 182
G A R S +R F + S ASLALP + + LG +E+LP R R
Sbjct: 10 GGACRLISPIRRRFPVSSSVASLALPDSSSMIVD-DNLGAFLEILPKDLRHR 60
>At1g33290.1 68414.m04117 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 379
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = -1
Query: 337 GWALRSSSAVRSMFCLDCSKASLALPFACVXKRSLETLGEGVELLPARTRSR 182
G A R S +R F + S ASLALP + + LG +E+LP R R
Sbjct: 10 GGACRLISPIRRRFPVSSSVASLALPDSSSMIVD-DNLGAFLEILPKDLRHR 60
>At5g45330.1 68418.m05564 expressed protein ; expression supported
by MPSS
Length = 571
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 125 SLTRSPSQRTHRTSARLGRTAPSPCWQQLNAFAKS 229
SLT SP T + G + P P + Q N FA S
Sbjct: 185 SLTESPVSLIDSTQSNAGSSMPIPSFVQGNKFASS 219
>At4g27630.2 68417.m03972 expressed protein
Length = 467
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 97 KEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLATA 210
+E K L + L ++KDA FS+ WK ++ L A
Sbjct: 263 EELSKQLFLEIYELRQAKDAAAFSRTWKGHVQNFLGYA 300
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 97 KEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLATA 210
+E K L + L ++KDA FS+ WK ++ L A
Sbjct: 144 EELSKQLFLEIYELRQAKDAAAFSRTWKGHVQNFLGYA 181
>At1g68060.1 68414.m07775 expressed protein
Length = 622
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 28 ALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFN--SLTKSKDAQDFSKAWKDGSESVL 201
A+ G D+ + + +E KTL+++ +T ++ A + WKDG++ V+
Sbjct: 275 AVLAGGAAANAVRDYQRKFQEMNEE-RKTLDRELARAKVTANRVATVVANEWKDGNDKVM 333
Query: 202 ATAQRLRQ 225
Q L +
Sbjct: 334 PVKQWLEE 341
>At1g24764.1 68414.m03106 expressed protein
Length = 607
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 28 ALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFN--SLTKSKDAQDFSKAWKDGSESVL 201
A+ G D+ + + +E KTL+++ +T ++ A + WKDG++ V+
Sbjct: 283 AVLAGGAAANAVRDYQRKFQEMNEE-RKTLDRELARAKVTANRVATVVANEWKDGNDKVM 341
Query: 202 ATAQRLRQ 225
Q L +
Sbjct: 342 PVKQWLEE 349
>At5g62170.1 68418.m07804 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 703
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 82 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESV 198
I HH K ++ NSL +++ FS KDG+ ++
Sbjct: 61 INHHHLHLPKGVDAPRNSLESTEEETSFSPTRKDGNLNI 99
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 85 EHHTKEFHKTLEQQFNSLTKS-KDAQDFSKAWKDGSESVLATAQRLRQESPG 237
+ ++++ TL+ +L K KD S+ DG+ V ++ L+ SPG
Sbjct: 283 DEFARQYYNTLQNAPENLYKLYKDKSTISRPGLDGTMRVFTLSKDLKWRSPG 334
>At1g43690.1 68414.m05019 ubiquitin interaction motif-containing
protein contains Pfam profile PF02809: Ubiquitin
interaction motif
Length = 599
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 248 DTRERQGQGGFGTVEAEH 301
D R++ G GGF TVEA H
Sbjct: 427 DARDQSGGGGFITVEAFH 444
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 342 RQGGPCGAPRPCARCSASTVPKPP 271
+Q P GAP P A S++ P PP
Sbjct: 11 QQWPPAGAPPPPAAVSSAAPPHPP 34
>At3g12360.1 68416.m01541 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 590
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 273 EALEQSRQNIERTAEELRKAHPDVXKNAT 359
E +++ +N+ ++ELRK H + NAT
Sbjct: 391 EQTKRTNKNVHNISKELRKLHREGINNAT 419
>At1g64990.1 68414.m07366 expressed protein contains similarity to
putative G-protein coupled receptor GI:6649579 from
[Homo sapiens]
Length = 468
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 97 KEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLATA 210
+E K L + L ++KDA +S+ WK +++L A
Sbjct: 264 EELSKQLFLEVYELRQAKDAAAYSRTWKGHVQNLLGYA 301
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,333,840
Number of Sequences: 28952
Number of extensions: 134348
Number of successful extensions: 561
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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