Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30478
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    28   0.91 
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   1.6  
SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...    27   1.6  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   2.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   4.8  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 249 CSLRPLLQHPY*SYSLRQWKN 311
           CSL+ ++QHPY  +S   WKN
Sbjct: 497 CSLKQVMQHPY--FSKIDWKN 515


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 172 ISSILGFIELNYNIHGSSVSTTTKYCPLPLHLF-SL*KVCRAWRVPYFSL*TAF 14
           IS  +  I +N  +    +  T +Y PL LHL  SL  +CR+ R+ Y  L + F
Sbjct: 332 ISKEISPIAINLTLDCIRLIPTEQYYPLRLHLLKSLVNICRSTRL-YIPLSSQF 384


>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 220 FTEFKIDNSHAHCDLSYNIHTRATVYVSG 306
           FT+FKI N    CD+ + I      Y  G
Sbjct: 143 FTDFKIQNIVGSCDVKFPIRLEGLAYSHG 171


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 390 AL*KLVHSNFASKNCCCNNITSFSNNLVSLEPLRAPS 500
           AL K+ +SN  S N   N + S    L +LEP  +PS
Sbjct: 371 ALPKITNSNLISPNQTFNPVKSSVKALPTLEPPSSPS 407


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 40   ALAKPDKPSKGKKGVVEEDNIWWW*RQSYHG 132
            AL+KPD       G+   D+++WW  Q   G
Sbjct: 3606 ALSKPDFDLDMYLGIFIRDDLFWWLAQQTKG 3636


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 387 TAL*KLVHSNFASKNCCCNNITSFSNNLVS 476
           ++L +LV ++  S N C  N++  SNN VS
Sbjct: 7   SSLQQLVAADSKSSNFCFRNLSQSSNNNVS 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,518
Number of Sequences: 5004
Number of extensions: 36627
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)