Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30478
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26370.2 68417.m03792 antitermination NusB domain-containing ...    33   0.082
At4g26370.1 68417.m03791 antitermination NusB domain-containing ...    33   0.082
At3g13229.1 68416.m01664 hypothetical protein                          31   0.44 
At1g09050.1 68414.m01009 expressed protein                             30   1.0  
At1g20400.1 68414.m02544 myosin heavy chain-related                    29   1.3  
At4g10730.1 68417.m01753 protein kinase family protein contains ...    28   4.1  
At1g21980.1 68414.m02750 1-phosphatidylinositol-4-phosphate 5-ki...    27   5.4  
At1g76050.2 68414.m08832 pseudouridine synthase family protein c...    27   7.1  
At1g76050.1 68414.m08831 pseudouridine synthase family protein c...    27   7.1  
At5g46540.1 68418.m05730 ABC transporter family protein contains...    27   9.4  

>At4g26370.2 68417.m03792 antitermination NusB domain-containing
           protein contains Pfam profile: PF01029 NusB family
          Length = 248

 Score = 33.5 bits (73), Expect = 0.082
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 193 IKMTSGLCYFTEFKIDNSHAHCDLSYNIHTRATVYVSGRMGCAREASSGHECYLNPSLCP 372
           ++ +S LCYF+     +SH     +     R T  VS R G  R +SS    +L+P+   
Sbjct: 10  LRSSSNLCYFSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSLRLFLSPTRSA 69

Query: 373 LST 381
           L T
Sbjct: 70  LRT 72


>At4g26370.1 68417.m03791 antitermination NusB domain-containing
           protein contains Pfam profile: PF01029 NusB family
          Length = 301

 Score = 33.5 bits (73), Expect = 0.082
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 193 IKMTSGLCYFTEFKIDNSHAHCDLSYNIHTRATVYVSGRMGCAREASSGHECYLNPSLCP 372
           ++ +S LCYF+     +SH     +     R T  VS R G  R +SS    +L+P+   
Sbjct: 10  LRSSSNLCYFSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSLRLFLSPTRSA 69

Query: 373 LST 381
           L T
Sbjct: 70  LRT 72


>At3g13229.1 68416.m01664 hypothetical protein
          Length = 289

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 71  GKKV*WKRTIFGGGRDRATMDVVIE 145
           GK+V + RT FGGG  R   +VVIE
Sbjct: 145 GKRVFYTRTAFGGGESRRENEVVIE 169


>At1g09050.1 68414.m01009 expressed protein
          Length = 916

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 167 RDKEKLPLKSK*HQDCVTSLNLKSTIVMLTATSLTTSILELQ-STSVEEWAVHARHQVDT 343
           +DKE +PL        V  +NLKS     T T L++S++E+Q +T++E   +++   VD 
Sbjct: 652 QDKEIVPL--------VEHMNLKSDQSKKTGTGLSSSLVEIQETTAIEPSGLNSNTGVDK 703

Query: 344 N 346
           N
Sbjct: 704 N 704


>At1g20400.1 68414.m02544 myosin heavy chain-related
          Length = 944

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +2

Query: 86  WKRTIFGGGRDRATMDVVIEFDETQDARDK---EKLPLKSK 199
           ++RT+ G  RDR T+D+  E ++T +  D+   EK  L+S+
Sbjct: 745 YQRTVMGEERDRCTLDLEKEREKTVELEDRLKSEKKRLRSR 785


>At4g10730.1 68417.m01753 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 315 AHSSTDVD-CSSSMDVVREVAVSMTIVDFKFSEVTQS*CHF 196
           A  S D+D C+S++D +R  A +MT++D     V +S C F
Sbjct: 74  AIKSLDLDRCNSNLDDIRREAQTMTLID--HPNVIKSFCSF 112


>At1g21980.1 68414.m02750 1-phosphatidylinositol-4-phosphate
           5-kinase, putative / PIP kinase, putative /
           PtdIns(4)P-5-kinase, putative / diphosphoinositide
           kinase, putative strong similarity to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 752

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = -1

Query: 458 EASYVITTTIFRCKVRMN*FL*SGEKVERGHRLGLR*HSCPLDASRAQ 315
           EAS VI +++ + K + N  L  GE+VER   L L   S P+  SR+Q
Sbjct: 12  EASEVILSSVVQKKKKKN--LRFGEEVERRDGLVLLAQSTPMVRSRSQ 57


>At1g76050.2 68414.m08832 pseudouridine synthase family protein
           contains Pfam profiles: PF00849 RNA pseudouridylate
           synthase, PF01479: S4 domain
          Length = 430

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 196 KMTSGLCYFTEFKIDNSHAHCDLSYNIHTRATVYVS 303
           K T+GL      K ++SHAH    + +HT   VYVS
Sbjct: 235 KGTTGLLVVA--KDEHSHAHLAEQFKLHTIERVYVS 268


>At1g76050.1 68414.m08831 pseudouridine synthase family protein
           contains Pfam profiles: PF00849 RNA pseudouridylate
           synthase, PF01479: S4 domain
          Length = 313

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 196 KMTSGLCYFTEFKIDNSHAHCDLSYNIHTRATVYVS 303
           K T+GL      K ++SHAH    + +HT   VYVS
Sbjct: 235 KGTTGLLVVA--KDEHSHAHLAEQFKLHTIERVYVS 268


>At5g46540.1 68418.m05730 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to
           multidrug-resistant protein CjMDR1 GI:14715462 from
           [Coptis japonica]
          Length = 1248

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 496 GARRGSRDTRLFEKLVMLLQQQFFDAKLE*TNFYRAVKRLRGDT 365
           G R+ +R  RL+ K ++     FFD +   TN    + R+ GDT
Sbjct: 104 GERQSTRIRRLYLKTILRQDIGFFDTE---TNTGEVIGRMSGDT 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,326,944
Number of Sequences: 28952
Number of extensions: 193372
Number of successful extensions: 434
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)