Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30477
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.55 
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.3  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   2.2  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    25   5.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.9  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 80  FVLFIAAAVSADDEPVLARLLVSKQVLNK 166
           F+LFI+ A+S    PVLAR+L    +L+K
Sbjct: 159 FLLFISTAMSITAFPVLARILSELHLLHK 187


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 213 LNNVYFTSISIFSTKYLFSTCF 148
           LN+  FTS+S+ S+KY F T F
Sbjct: 156 LNDACFTSLSMKSSKYSFLTAF 177


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 209 FNVGSAPAVEVKLVDNGFHPDV 274
           FNVG +  V V L D  FH DV
Sbjct: 86  FNVGISVIVRVTLKDGSFHEDV 107


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 375 ISTSARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKI 488
           +    +RK  TK     +  +I SAVL E +P   SK+
Sbjct: 132 VGKEVQRKLRTKQLDLSKAESIISAVLGEEKPDPSSKV 169


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 92   IAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKY 202
            IAA++  +D P + RL   +  +N Y++++    + Y
Sbjct: 1989 IAASLKGEDIPSIQRLYCYEGPINNYMIKSWGSRLSY 2025


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,676
Number of Sequences: 5004
Number of extensions: 38036
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)