Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30477
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 57 7e-09
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14... 47 8e-06
05_05_0266 - 23694466-23696787,23696885-23697187 29 1.7
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836... 29 2.2
04_03_0521 + 16765347-16767324,16769202-16769392 29 2.9
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26... 29 2.9
05_04_0181 + 18799445-18799593,18801112-18801163,18801964-188019... 28 3.9
08_02_1080 - 24197514-24199415 27 6.8
04_04_0895 - 29168107-29168229,29168617-29170068 27 8.9
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 57.2 bits (132), Expect = 7e-09
Identities = 41/148 (27%), Positives = 71/148 (47%)
Frame = +2
Query: 59 MAAKLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVE 238
MA +L +L AAA ++ D P L K VE + V L+N GSA A +
Sbjct: 3 MARSILLLLLLAAAASASADAPFLVAHKKVSLSRPKPGVERL--AVSLDLYNQGSATAYD 60
Query: 239 VKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASE 418
V + D+ + + F +V G+++ ++R+ P SH + + G F S A +TY+
Sbjct: 61 VSINDDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPT 120
Query: 419 DATDVQYSISSAPGEGAIVAFKDYDRKF 502
A +Q + S+ ++A + ++KF
Sbjct: 121 KAA-LQEAYSTPILALDVLAERPPEKKF 147
>05_01_0021 -
148084-148191,148387-148488,148641-148727,148845-148979,
149109-149324,149772-150043,151346-151394,151521-151526,
151657-151728,152077-152185,152272-152370,153186-153364
Length = 477
Score = 47.2 bits (107), Expect = 8e-06
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Frame = +2
Query: 71 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 250
LL +L AA + D P + + K L++ + V L+N GSA A +V L
Sbjct: 11 LLLLLLVPFAAAAGQDAPFV--VAQKKVALSRPGPGVERLAVTLNLYNQGSATAYDVSLN 68
Query: 251 DNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKA-SEDAT 427
D+ + + F ++ G + ++++ P SH + + G F S A +TY+ ++ A
Sbjct: 69 DDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITYRVPTKAAL 128
Query: 428 DVQYSISSAPGEGAIVAFKDYDRKF 502
YS P + I+A + +KF
Sbjct: 129 QEAYSTPMFPLD--ILAERPPQQKF 151
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 80 FVLFIAAAVSADDEPVLARLLVSKQVLNKYL 172
F+LF+ A+S PVLAR+L ++LN L
Sbjct: 196 FLLFLGVALSVTAFPVLARILAEVKLLNSDL 226
>01_06_1133 +
34781799-34782071,34782168-34783166,34783252-34783663,
34783727-34784670
Length = 875
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 80 FVLFIAAAVSADDEPVLARLLVSKQVLNKYL 172
F+LF+ A+S PVLAR+L ++LN L
Sbjct: 186 FLLFLGVALSVTAFPVLARILAEIKLLNTEL 216
>04_03_0521 + 16765347-16767324,16769202-16769392
Length = 722
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 140 LVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVDNGFHPDVFT 280
++ + VL K L+ N I + + A ++ K+VD+G PD+FT
Sbjct: 74 MMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFT 120
>01_01_0033 +
260562-260661,260895-260941,261582-261681,261925-262181,
262525-262640,263014-263098,264236-264415,264740-264817,
264909-264970,265138-265246,266237-266514,266591-266657,
266734-266802,266880-266981,267309-267443
Length = 594
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 71 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNK 166
+ +++L A +S D PV+ARL+ K V+ K
Sbjct: 264 ITFYLLMKAEGLSVQDHPVIARLVEIKSVVEK 295
>05_04_0181 +
18799445-18799593,18801112-18801163,18801964-18801999,
18802098-18802233,18802313-18802512
Length = 190
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 287 GGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTY 406
GG TA+ + Q + +T + YGY NFS EV +
Sbjct: 150 GGSSTAQHEIGPSQLDEPPPITQPTQDYGYINFSGVEVAH 189
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 366 STAISTSARRKSHTKPAKTPQTSNIRS 446
S +S S RRKSH+ AK TS I S
Sbjct: 539 SNELSFSGRRKSHSGVAKNKVTSKINS 565
>04_04_0895 - 29168107-29168229,29168617-29170068
Length = 524
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 312 SISAVSCPPTTVNTSGWKPLSTSFTSTAGALPTL 211
S S+ SCPP ++S LST+ TS A T+
Sbjct: 45 SSSSSSCPPDAASSSSSVRLSTNGTSAGAAAVTV 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,148,124
Number of Sequences: 37544
Number of extensions: 243688
Number of successful extensions: 707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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