Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30477
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)                       30   0.98 
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                27   6.9  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_49220| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 27   9.2  
SB_34286| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 27   9.2  

>SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
 Frame = -1

Query: 411 ALYVTSAELKLK*PYLLDRTVTTWDTLV*---GAILSISAVSCPPTTVNTSGWKPLSTSF 241
           +LYV    L+ + P + D T ++   +V    G +LSISAV+ P T + +SG + L    
Sbjct: 101 SLYVLQDLLQGEPPIVQDVTFSSEYLVVLLQSGLVLSISAVT-PDTAILSSG-RELVVKH 158

Query: 240 TSTAGALPTLNNVYFTSISIFSTKYL 163
             +A A+PT NN   T  ++ S  ++
Sbjct: 159 QDSAIAMPTGNNTIKTVATVESGGFI 184


>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 523

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 382 VEIAVLIGPDSHYMGYISLRCNPIDFRGQLSAYYSKHVRMEAVVHE 245
           VE+ VL G +  Y G +  + +P D   +++ Y   HV  EA+V E
Sbjct: 54  VELPVLCGGEKVYTGNVKYQVSPFDHSNKIAKY---HVADEALVKE 96


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = -3

Query: 490 IIFEGYDGSLSWSTADRILDVCGVFAGFVCDFRRAEVEIAVLIGPDSHYMGYISLRCNPI 311
           I  +GY G+    +   + ++ G++ G +CD RR   +   + G    ++G  +L C+  
Sbjct: 396 ICLDGYTGADCSLSKALVPELFGIYDGGLCDIRRRPCKKTDIFG--DGFIGSENLTCHST 453

Query: 310 DFR 302
           +F+
Sbjct: 454 EFK 456


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 257  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1437 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1467



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 257  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1459 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1489



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 257  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1481 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1511



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 257  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1503 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1533



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 257  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1525 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1555



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 257  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
            R P   L  P+RS + T+ + L YPY LL I
Sbjct: 1591 RYPYALLTVPLRSTYDTLTLYLRYPYPLLTI 1621



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 257  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1547 RYPYALLTIPLRSTYDTLTLNLRYPYALLTI 1577



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 257  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 165
            R P   L  P+RS + T+ + L YPY+LL +
Sbjct: 1569 RYPYALLTIPLRSTYGTLQLYLRYPYALLTV 1599


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 363 ISTAISTSARRKSHTKPAKTPQTSNIRSAVLQEREPS*PS 482
           +S+  +   + ++HT PA+ P  S++ +  +Q R P+ P+
Sbjct: 267 LSSRETPPVQPRNHTCPAEKPHLSSLETPPVQPRNPTSPA 306



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 387 ARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESS 503
           A+ ++ T PA+ P  S+  +  +Q+R P+ P+K    SS
Sbjct: 106 AQPRNPTSPAEKPHQSSKETQPVQQRNPAGPAKKPSRSS 144


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 312 SISAVSCPPTTVNTSGWKPLSTSFTSTAGALPTLNNV 202
           SI A +    TVN S W   S   TS+A  L TL +V
Sbjct: 872 SILATANKLHTVNRSVWNSTSQVMTSSAAVLSTLKDV 908


>SB_49220| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 207

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 510 CEENFLS*SLKATMAPSPGALLIEYWTSVASSLALYVTS 394
           C E F S S +  ++ +  A+   + +SVA+ L +YVTS
Sbjct: 14  CNEFFFSISHEVKVSLTAPAVFTSFLSSVANVLIIYVTS 52


>SB_34286| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 207

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 510 CEENFLS*SLKATMAPSPGALLIEYWTSVASSLALYVTS 394
           C E F S S +  ++ +  A+   + +SVA+ L +YVTS
Sbjct: 14  CNEFFFSISHEVKVSLTAPAVFTSFLSSVANVLIIYVTS 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,368,913
Number of Sequences: 59808
Number of extensions: 311115
Number of successful extensions: 748
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)