Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30476
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   194   5e-52
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   194   5e-52
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   10.0 

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  194 bits (473), Expect = 5e-52
 Identities = 90/106 (84%), Positives = 97/106 (91%)
 Frame = +3

Query: 186 MSNLADPVAFAKDFLAGGIXAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIXDAF 365
           MS LADPVAFAKDFLAGG+ AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG+ D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 366 VRIPKEQGLLSFWRGNFANVIXYFPTQALNFAFKDKYKQVFLGGVD 503
           VRIPKEQG LS+WRGN ANVI YFPTQALNFAFKDKYKQVFLGGVD
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVD 106



 Score = 29.1 bits (62), Expect = 0.028
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +3

Query: 213 FAKDFLAGGIXAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIXDAFVRIPKEQGL 392
           F  +  +GG   A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 393 LSFWRGNFANVIXYFPTQALNFAFKD 470
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 24.6 bits (51), Expect = 0.61
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 273 PIERVKLLLQVQHVSKQIAADQRYKGIXDAFVRIPKEQGLLSFWRGNFANVI 428
           P + V+  + +Q  S +  ++  YK     +  I K +G  +F++G F+N++
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNIL 281


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  194 bits (473), Expect = 5e-52
 Identities = 90/106 (84%), Positives = 97/106 (91%)
 Frame = +3

Query: 186 MSNLADPVAFAKDFLAGGIXAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIXDAF 365
           MS LADPVAFAKDFLAGG+ AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG+ D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 366 VRIPKEQGLLSFWRGNFANVIXYFPTQALNFAFKDKYKQVFLGGVD 503
           VRIPKEQG LS+WRGN ANVI YFPTQALNFAFKDKYKQVFLGGVD
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVD 106



 Score = 29.1 bits (62), Expect = 0.028
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +3

Query: 213 FAKDFLAGGIXAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIXDAFVRIPKEQGL 392
           F  +  +GG   A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 393 LSFWRGNFANVIXYFPTQALNFAFKD 470
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 24.6 bits (51), Expect = 0.61
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 273 PIERVKLLLQVQHVSKQIAADQRYKGIXDAFVRIPKEQGLLSFWRGNFANVI 428
           P + V+  + +Q  S +  ++  YK     +  I K +G  +F++G F+N++
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNIL 281


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 445 WVGKYXXTLAKLPRQNERR 389
           WVG     LA+L R  ER+
Sbjct: 228 WVGGESEALARLERHLERK 246


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 111 VIPHPRVPQLPPRHIHLVKIT 173
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 309 HVSKQIAADQRYKGIXDAFVRIPK 380
           ++ K IAA   +KG+     RIP+
Sbjct: 763 YIQKMIAAAAPFKGMETQDYRIPE 786


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 387 PAPWGCGRRRRR 352
           P P GC RRR R
Sbjct: 1   PGPNGCPRRRGR 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,770
Number of Sequences: 438
Number of extensions: 2367
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)