Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30475
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   1.7  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   5.1  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   5.1  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   8.9  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.9  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 323 TRLRTNLPIKNSFLPSHRPPPEQSS-STLPGATEVIHNAFPEVFFATYHP 469
           TRL T+ P  +S LPS        S S++P  T  + N  P V  ++ HP
Sbjct: 107 TRL-TSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHP 155


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 389 QSSSTLPGATEVIHNAFPEVFFATYHPAME 478
           ++S T+PG  EVI  A   V   TY  ++E
Sbjct: 238 EASGTVPGTVEVIEPAVGTVTTTTYSGSVE 267


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 384 RSRVHPHYLEPLRSSTMRFQRSFLPRTIRLWNELPSTVFLERYD 515
           R ++  HY  PLR++ ++F     P  + ++  L +   +ER D
Sbjct: 362 RVKIEKHYDTPLRATPLQFPE---PEYLLMYGNLSNEELVERID 402


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 182 FKRSVRWFIIRSKLYTVFYKFGV 250
           F  +VRW I   +LY V+ K G+
Sbjct: 480 FSPNVRWLIQVPRLYDVYKKSGI 502


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 362 LPSHRPPPEQSSSTLPGATEVIHN--AFPEVFFATYHPAME 478
           +PS   PP + S T+   TE + N     E    T+ P  E
Sbjct: 144 IPSGLVPPSEPSKTVSSTTEELQNEAQIRESIVKTFFPTFE 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,954
Number of Sequences: 5004
Number of extensions: 36003
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)