Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30475
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0343 + 19750914-19751047,19752091-19752676                       29   2.2  
08_01_0490 + 4284192-4284740                                           28   3.9  
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511...    28   3.9  
07_01_1092 + 10022230-10022575,10023264-10023410,10023935-10024038     28   5.1  
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956...    28   5.1  
11_06_0094 - 20007535-20007658,20007759-20008367,20009021-200090...    27   6.8  
01_06_1100 + 34530132-34530485,34530544-34530705                       27   8.9  

>06_03_0343 + 19750914-19751047,19752091-19752676
          Length = 239

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 353 NSFLPS--HRPPPEQSSSTLPGATEVIHNAFPEVFFATYHPAM 475
           N F P+   +PPP  ++S  PG        F  +FF+T+  AM
Sbjct: 72  NGFAPTGYQQPPPPPAASASPGGWIASTAIFMSIFFSTFLLAM 114


>08_01_0490 + 4284192-4284740
          Length = 182

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 344 PIKNSFLPSH--RPPPEQSSS--TLPGATEVIHNAFPEVFFATYHPAM 475
           P   SFLP+H  RP    SSS   L GA  ++ +A PE     +H A+
Sbjct: 8   PTSPSFLPAHLLRPHAASSSSGLQLAGAKVLVRDAPPETGGGPHHNAI 55


>01_01_0668 -
           5109476-5110112,5110196-5110439,5110519-5110917,
           5111390-5111668,5111886-5112257,5112371-5112475,
           5112832-5112909,5112990-5113199,5113287-5113406,
           5113508-5113606,5113685-5113750,5113914-5114141,
           5114216-5114521,5115324-5115381
          Length = 1066

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 311 GISLTRLRTNLPIKNSFLPSHRPPPEQSSST 403
           G S+    T+ P KNS +P   PP E SS T
Sbjct: 253 GNSVPPANTSPPHKNSHIPRALPPKESSSQT 283


>07_01_1092 + 10022230-10022575,10023264-10023410,10023935-10024038
          Length = 198

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 2   GDRGRPWCRRWLLHWIRYCW 61
           GD  R WCRR LL W    W
Sbjct: 92  GDGARAWCRRRLLLWKSSPW 111


>02_02_0379 +
           9565001-9565515,9565553-9565833,9565884-9566084,
           9566253-9566309,9566955-9567019,9567199-9567420
          Length = 446

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 503 EKHRGGELIP*PDGTWQKRPLETH 432
           E+   GEL+P PD +W+ RPL+ H
Sbjct: 373 EEDLPGELLPMPDPSWE-RPLKPH 395


>11_06_0094 -
           20007535-20007658,20007759-20008367,20009021-20009094,
           20009187-20009837
          Length = 485

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 350 KNSFLPSHRPPPEQSSSTLPGATEVIHNAFPE 445
           K+SF+  +   P   +S L GA EVI   FP+
Sbjct: 358 KDSFVQHYIGAPGFEASALKGAEEVIRRTFPD 389


>01_06_1100 + 34530132-34530485,34530544-34530705
          Length = 171

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 372 TARHRSRVHPHYLEPLRSSTMRFQRSFLPRTIRLWNELPSTVF 500
           +A+H    H   L+ L+  T + +   +   + L+NEL ST+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,005
Number of Sequences: 37544
Number of extensions: 246314
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)