Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30475
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta...    30   1.1  
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4...    29   1.9  
At3g21480.1 68416.m02710 transcription activation domain-interac...    28   4.3  
At1g13700.1 68414.m01610 glucosamine/galactosamine-6-phosphate i...    28   4.3  
At5g49530.1 68418.m06130 SIN-like family protein low similarity ...    27   5.7  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    27   7.5  
At3g12460.1 68416.m01551 hypothetical protein                          27   9.9  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    27   9.9  

>At3g62700.1 68416.m07043 glutathione-conjugate transporter,
           putative similar to glutathione-conjugate transporter
           AtMRP4 GI:2959767 from [Arabidopsis thaliana]
          Length = 1539

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 164 NTSQFDFKRSVRWFIIRSKLYTVFYKFGVKWSG 262
           +T QF+F       +IRS L T  YK G+K +G
Sbjct: 379 STHQFNFNSQKLGMLIRSTLITALYKKGLKLTG 411


>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
           identical to AtMRP4 GI:2959767 from [Arabidopsis
           thaliana]
          Length = 1516

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 167 TSQFDFKRSVRWFIIRSKLYTVFYKFGVKWSG 262
           T QF+F       +IRS L T  YK G+K +G
Sbjct: 382 THQFNFDSQKLGMLIRSTLITALYKKGLKLTG 413


>At3g21480.1 68416.m02710 transcription activation
           domain-interacting protein-related contains weak
           similarity to Pax transcription activation domain
           interacting protein PTIP (GI:4336734) [Mus musculus]
          Length = 1045

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 423 TSVAPGSVDELCSGG-GRCDGKNEFLIGR 340
           T VA  ++D+LCSG  G+ DG+   L G+
Sbjct: 453 TQVAAEAIDDLCSGDRGKFDGEASCLTGK 481


>At1g13700.1 68414.m01610 glucosamine/galactosamine-6-phosphate
           isomerase family protein similar to SP|O95336
           6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) {Homo
           sapiens}; contains Pfam profile PF01182:
           Glucosamine-6-phosphate
           isomerase/6-phosphogluconolactonase
          Length = 268

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 368 SHRPPPEQSSSTLP---GATEVIHNAFPEVFFATYHPAME*APLHGVSRAL 511
           SH+PPPE+ + TLP    A  V+  A  E      H A++  PL   S +L
Sbjct: 187 SHKPPPERITFTLPVINSAANVVVVATGESKANAIHLAIDDLPLPDSSLSL 237


>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
           Sex-lethal interactor [Drosophila melanogaster]
           GI:6049274; contains Pfam profile PF04801: Sin-like
           protein conserved region
          Length = 689

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = -1

Query: 444 SGNALWMTSVAPGS-VDELCSGGGRCDGKNEFLIGRLVLSL 325
           +GN+    +++PG+ ++ELC GG   + +++  + R++LSL
Sbjct: 298 NGNSSIDFNMSPGTYINELCRGGSSRNSESKETLKRVLLSL 338


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 16  TVVPPVASTLDPVLLEVPEEPTSEPRRTSAN 108
           T  PP  + + PV   +P EP++E   +SA+
Sbjct: 828 TAKPPTVAEVAPVTSNIPLEPSTEAASSSAS 858


>At3g12460.1 68416.m01551 hypothetical protein
          Length = 242

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +1

Query: 355 FVFTIAPPATGAEFIHTTWSH*---GHPQCVSRGLFCHVPSGYGMSSPPRCFSS 507
           FV     P+   ++IH  + H     HP  V  G+    PSGY  +SPP  + S
Sbjct: 27  FVTVTPDPSVIGQWIHDVFFHNRLSSHPLVVGVGVQW-TPSGYHPASPPVSYRS 79


>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 25  PPVASTLDPVLLEVPEEPTSEP 90
           PP    L P LL  PEEP  EP
Sbjct: 82  PPPLPRLPPPLLPPPEEPPREP 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,044,129
Number of Sequences: 28952
Number of extensions: 189510
Number of successful extensions: 545
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)