Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30472
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 30 0.24
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 1.3
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 2.9
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 3.8
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 3.8
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 3.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 3.8
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 25 6.7
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 25 8.9
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 8.9
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.9 bits (64), Expect = 0.24
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 323 GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 490
G ID++ +++KR Y ++ ++ LE ++R + EISD +++ L
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 332 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 451
+NI D++ED I ++ Y + A DE+ E+ + KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 201 KPFFAFLALEASSMRLRTSARLRSISACL 115
K FF L E+ +RL+T+ + S+ CL
Sbjct: 325 KAFFTLLESESMEIRLQTATTICSVIGCL 353
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 353 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 484
ED+ + D+H A E+EK + K ME+ ++N V+
Sbjct: 23 EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 365 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 490
+R+C+ + + + + +DL++ E S L+ QVNDL
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDL 938
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 430 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 308
+ +++ + K + M V +PL S F+ +N LRF + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 383 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 481
+HE I +L+D + +L +++K++ IS L V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 401 RLEDEKFDLE-YIVKRKDME-ISDLNSQVNDLRGKFV 505
+LEDEKFD E Y+ D E I ++ + D G+F+
Sbjct: 206 QLEDEKFDAEHYMADFYDREMIDEILHYIPDYIGEFL 242
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 350 NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLN 472
N++ IK + Y ERI ED+ L+ ++ + E + N
Sbjct: 87 NDNDIKNFIRSYAERIVNNEDKNVFLDSLLLSPNYEYLEEN 127
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 382 VFANPLNSIFVGVVNVLRFTAPLLDDAPP 296
VF P+ + N+ +FT P + APP
Sbjct: 299 VFGKPIGDLTSDPTNLCKFTFPTPECAPP 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,085
Number of Sequences: 5004
Number of extensions: 20256
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -