Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30469
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040647-10|AAB94993.1|  124|Caenorhabditis elegans Hypothetical...    28   3.4  
AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm rec...    28   4.6  
Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL023828-15|CAA19460.1|  411|Caenorhabditis elegans Hypothetical...    27   8.0  

>AF040647-10|AAB94993.1|  124|Caenorhabditis elegans Hypothetical
           protein F54D12.2 protein.
          Length = 124

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 458 CHSFLFSNVNLWLKLEKSFILFKSLYLYHSIRYF---LTCYMKFSA 330
           C + ++ NV  W+KL       KSL  Y +++Y    ++C   F++
Sbjct: 46  CRNVMYGNVTSWIKLLAKLPKSKSLLNYIAVKYVYDKVSCLKNFAS 91


>AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 130 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 491 FKYHVQCTNQKCHSFLFSNVNLWL 420
           F+Y   C N K H F   NV LWL
Sbjct: 111 FRYIAVCKNNKLHYFEGINVYLWL 134


>Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical
           protein R07B1.9 protein.
          Length = 770

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 460 NAIHFCSVMLTFGSNWRNHLYCLNLSIYIIALDI 359
           N IH  +  + F S WRNH   +  S+Y+++  I
Sbjct: 50  NFIHVVTGCIGFYSLWRNHGSIVTKSLYLVSFVI 83


>AL023828-15|CAA19460.1|  411|Caenorhabditis elegans Hypothetical
           protein Y17G7B.13 protein.
          Length = 411

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 509 KVTMQFFKYHVQCTNQKCHSFLFSNVNLWLKLEKSFILFK-SLYLYHSIR 363
           ++  Q  +Y +  T + C  F+      +LKL K+  LFK S Y +   R
Sbjct: 358 ELLQQLRRYFLAATMKDCSKFVKLKKKQYLKLSKNNYLFKISTYFFEVFR 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,801,531
Number of Sequences: 27780
Number of extensions: 168707
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)