Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30469
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ...    30   0.80 
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ...    30   0.80 
At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain...    30   1.1  
At5g22670.1 68418.m02649 F-box family protein contains F-box dom...    27   7.5  
At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p...    27   7.5  

>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 626

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +2

Query: 74  ASYGNLRYK*FV*HFPALKNLXNFSFATFEIKHIFNGSYKNETCINKL 217
           AS+  LRY     H P+  +L NF F   E     N S K ET I+K+
Sbjct: 334 ASFKGLRY-----HLPSTHDLLNFEFWVTEEFQAVNVSLKTETMISKV 376


>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 631

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +2

Query: 74  ASYGNLRYK*FV*HFPALKNLXNFSFATFEIKHIFNGSYKNETCINKL 217
           AS+  LRY     H P+  +L NF F   E     N S K ET I+K+
Sbjct: 334 ASFKGLRY-----HLPSTHDLLNFEFWVTEEFQAVNVSLKTETMISKV 376


>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 443

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -2

Query: 446 LFSNVNLWLKLEKSFILFKSLYLYHSIRYFLTCYMKFSAKSQNYL*DKMVLM 291
           LFS V L+LK +   I   SLY Y    +F   Y+  + KS  +   K ++M
Sbjct: 3   LFSRVLLFLKKKSFSIAVSSLYFYICKSHFCLPYIYTTLKSTIFCPKKFIIM 54


>At5g22670.1 68418.m02649 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 59  KKLMQASYGNLRYK*FV*HFPALK-NLXNFSFATFEIKHIFNG--SYKNETCINKLKIK* 229
           K  ++ S  + R+K F    P L+ N+  F    +E   + +G      ETCI+KLK+  
Sbjct: 31  KVAVRTSVLSKRWKRFSLSVPLLEFNVSEFH-GYYEFARVVHGFLDTSRETCIHKLKLAF 89

Query: 230 QKHSHN 247
           +K  H+
Sbjct: 90  EKKQHD 95


>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
           putative (RPN3) similar to 26S proteasome regulatory
           subunit S3 SP:P93768 [Nicotiana tabacum (Common
           tobacco)]
          Length = 487

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 240 ECFCYFILSLFIQVSFL*LPLKICFISKVAKLK 142
           E +CYFI+ LF+         K+C  + +A+LK
Sbjct: 117 EIYCYFIVLLFLIDQKKYNEAKVCSTASIARLK 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,796,786
Number of Sequences: 28952
Number of extensions: 141231
Number of successful extensions: 291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)