Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30468
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 29 0.19
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 3.2
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 4.2
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 4.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 5.5
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 5.5
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 24 7.3
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 24 7.3
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 24 9.7
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 24 9.7
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 24 9.7
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 24 9.7
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 29.5 bits (63), Expect = 0.19
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 234 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 103
HNP L L +SRE SL D + R TL +S+LVS +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 3.2
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 147 FTLSMVSSLVSEVRNGFRFAVSVRVTVASTHSNNNVRLVVVVESLL-QLT 1
F+ ++ L + +G +AVS++ + ++ N+ +L ++ SLL Q+T
Sbjct: 247 FSAEFLNGLTDHMDSGIDYAVSLQKLIDASMDKNSQKLARLIFSLLYQIT 296
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 4.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 7 LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADETG 129
LKE ++DN P ++ ++ Y N +G E ++ F G
Sbjct: 76 LKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNG 116
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.0 bits (52), Expect = 4.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 132 VSSLVSEVRNGFRFAVSVRV-TVASTHSNNNVRLVVVVESLLQL 4
V SL ++ + R A V TVA +N+ RL VV++SLL +
Sbjct: 1288 VDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSV 1331
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 113 SLTRLDTMLRVNLFLRSPPPRAKLLNS 193
SL+ L LR + +R PP +K++NS
Sbjct: 685 SLSPLSYRLRKSKHIRESPPSSKVINS 711
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 80 TLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 196
TLTA+L+ T L+T L+ + PP L++S+
Sbjct: 139 TLTASLERATQPPTNLETALQFRVIRTIPPNSLDLMHSV 177
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 24.2 bits (50), Expect = 7.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 7 LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADE 123
+K +DDD+ ++ +R YS+ + PE T F D+
Sbjct: 605 VKYTIDDDSVERIMNCIRAIYSF---EELPEFQTVFLDD 640
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 317 VKKNVQKNMAVSIKLITSNKRMWWMLRHTILY 222
+KKN +++S+ T N + ++RH +LY
Sbjct: 155 LKKNRVDGLSLSMHFSTGNYSLPVLIRHVLLY 186
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 341 DILKTQQIVKKNVQKNMAVSIKLITSNK 258
D+LKT+ ++ ++ KN S KL+ +N+
Sbjct: 232 DMLKTRVQLEPHIYKNFLHSAKLVYANE 259
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 23.8 bits (49), Expect = 9.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 156 SGRLRHELNF*IPWIDLSNEALIQDCVAKHPPHS 257
+ R +LNF + +D S E + +HPP+S
Sbjct: 801 NSRTVEDLNFAMQQLDASIETFTKLVSVEHPPYS 834
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 258 ENVVDASPHNPVLRLHYLNLSREFRSLARGGGDLRNRF 145
+N+ + + H R+ YL++S + +S+ G GD RF
Sbjct: 370 KNIANLTAHTN--RVLYLSMSPDGQSIVTGAGDETLRF 405
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 7 LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 105
+++++D +PHV+VA G + ETI
Sbjct: 116 IRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,618
Number of Sequences: 5004
Number of extensions: 22528
Number of successful extensions: 69
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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