Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30468
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   3.1  
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_19798| Best HMM Match : Calx-beta (HMM E-Value=6.3e-12)             27   4.1  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    27   4.1  
SB_11461| Best HMM Match : NHL (HMM E-Value=0)                         27   7.2  
SB_47811| Best HMM Match : ig (HMM E-Value=5.2e-13)                    26   9.5  
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)         26   9.5  
SB_9558| Best HMM Match : DEAD (HMM E-Value=0)                         26   9.5  

>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 12  GGSRRRQQASRYCCCA 59
           GGSRRR   S++CC A
Sbjct: 97  GGSRRRNSKSKFCCFA 112


>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 350 FVHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRH 234
           F  ++L   ++++ N+Q++  VS +L  S K M  +L H
Sbjct: 811 FQDELLMLDELIQGNIQRSQLVSEQLSDSRKTMVKVLEH 849


>SB_19798| Best HMM Match : Calx-beta (HMM E-Value=6.3e-12)
          Length = 185

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 347 VHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRHTILY 222
           VH I   Q++++ N +KN    +     + + WW LR+ + Y
Sbjct: 139 VHTIF--QRLLRPNQRKNSPKKLFSACHSTKRWWRLRNVLAY 178


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 56  CVEATVTRTLTANLKPLRTSLTRLDT 133
           C   T    +T N KP +TSLTRL++
Sbjct: 348 CPVDTKAMNITVNYKPEKTSLTRLES 373


>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
          Length = 819

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 350 FVHDILKTQQIVKKNVQKNMAVSIKL 273
           FVHD +   ++VK+N++KN  + +++
Sbjct: 263 FVHDCIIQIRVVKQNIRKNQRMRMEM 288


>SB_47811| Best HMM Match : ig (HMM E-Value=5.2e-13)
          Length = 278

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 56  CVEATVTRTLTANLKPLRTSLTRLDT 133
           C   T T ++T   KP +TSLTRL++
Sbjct: 98  CPAYTRTTSITVIYKPEKTSLTRLES 123


>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3296

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -1

Query: 234  HNPVLRLHYLNLSREFRSLARGGGDLRNR----FTLSMVSSLVSEVRNGFRFAVSVRVTV 67
            H  VLR     L++ ++      GD+ +      TLS V  LVS    GF  A SV  T+
Sbjct: 2893 HEEVLRQLRQGLTKCYQVAFETRGDVSSARITPHTLSFVKKLVSTFGIGFEPASSVSTTL 2952

Query: 66   ASTHSNNNVR 37
            ++  S +  R
Sbjct: 2953 STAASESLAR 2962


>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
          Length = 1626

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 204  NLSREFRSLARGGGDLRNRFTLSMVSSL 121
            N++R  R + R   DL+ RFT   V SL
Sbjct: 1473 NVTRRMRFIQRSKEDLKKRFTREYVQSL 1500


>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 436

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 7   LKEALDDDNKPHVIVAVRG 63
           +K+AL   NKPHV++A  G
Sbjct: 116 MKQALSLANKPHVVIATPG 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,231,728
Number of Sequences: 59808
Number of extensions: 171899
Number of successful extensions: 485
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)