Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30468
         (393 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    28   2.6  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    27   4.5  
At1g63700.1 68414.m07209 protein kinase, putative contains prote...    27   4.5  
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR...    26   7.9  
At5g09910.1 68418.m01146 GTP-binding protein-related contains we...    26   7.9  
At1g44875.1 68414.m05141 hypothetical protein                          26   7.9  

>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 61   GSYSYTNTDGKPETITYFADETGYHAQGESIP 156
            GS++  N +G  E I +FA+E GY    +S+P
Sbjct: 1985 GSFTTFNKNGTAERI-FFAEEIGYELLKDSLP 2015


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 140 RVNLFLRSPPPRAK-LLNSL 196
           RV L+L  PPPRA  LLNSL
Sbjct: 154 RVILYLEGPPPRADILLNSL 173


>At1g63700.1 68414.m07209 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069; similar to MEK kinase
           (MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
          Length = 883

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 138 SMVSSLVSEVRNGFRFAVSVRVTVASTHSNNN 43
           S++S L S+  NG R  V++     S HSN N
Sbjct: 157 SLLSPLASDCENGNRTPVNISSRDQSMHSNKN 188


>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1210

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 249  VDASPHNPVLRLHYL---NLSREFRSL 178
            +D S HNP +RL++L   NL++E R L
Sbjct: 1006 IDGSFHNPDIRLNFLNCNNLNQEAREL 1032


>At5g09910.1 68418.m01146 GTP-binding protein-related contains weak
           similarity to GTP-binding protein yptV3.
           (Swiss-Prot:P36862) [Volvox carteri]
          Length = 431

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 368 QMNFIVFVHDILKTQQIVKKNVQK 297
           Q+N ++FVHD+  +Q+  K N+QK
Sbjct: 94  QINGVIFVHDL--SQRTTKTNLQK 115


>At1g44875.1 68414.m05141 hypothetical protein
          Length = 133

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 341 DILKTQQIVKKNVQKNMAVS-IKLITSNKRMWWMLRHTILY 222
           +++K   + K+ V     +  ++L  S   MWW + H+I Y
Sbjct: 46  NLIKAGPVFKEAVYSEKTLRCVRLDRSRNFMWWSMPHSIYY 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,058,451
Number of Sequences: 28952
Number of extensions: 121494
Number of successful extensions: 380
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)