Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30467
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    27   0.13 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.53 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.53 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   2.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +2

Query: 332 LXGSXTPLAP----RSPIPNASATPFRTPXPLPPSWRGPES 442
           L G+ TPL      +  +P      F T   LPP W+G ES
Sbjct: 189 LNGAHTPLTDDHDEKYGVPTLEELGFDTEGRLPPVWQGGES 229


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 20   SAFAQVHPNAMGRLHTFVVTLRRDSREINW 109
            S FA    NA+  L  F++TL++D   I W
Sbjct: 1268 SVFAFFMMNALFVLIVFLLTLKKDYLHIKW 1297


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 20   SAFAQVHPNAMGRLHTFVVTLRRDSREINW 109
            S FA    NA+  L  F++TL++D   I W
Sbjct: 1268 SVFAFFMMNALFVLIVFLLTLKKDYLHIKW 1297


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 164 VTPGTPAGRDLVRGDIIAKIDDYDARD 244
           V+  TP    LVRG ++AK    DARD
Sbjct: 502 VSVATPNDTSLVRGRLVAK-PVADARD 527


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 132 APPTSRSPQLISRESLRRVTTNVCNRPIAF 43
           +P +S SP++      R  T  VCNR   +
Sbjct: 117 SPTSSVSPEVKDSSRDRPFTCEVCNRSFGY 146


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +2

Query: 383 SATPFRTPXPLPPSWRGPESLPRSTPVPPS 472
           S TP     P PP        P   P P S
Sbjct: 36  SMTPNSAASPAPPEEEAASPTPGDVPTPSS 65


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 20   SAFAQVHPNAMGRLHTFVVTLRRDSREINWGL 115
            S FA    NA+  L  F++ L +D   + W L
Sbjct: 1268 SVFAFFMFNALFVLVVFLLQLNKDQIHVKWPL 1299


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 20   SAFAQVHPNAMGRLHTFVVTLRRDSREINWGL 115
            S FA    NA+  L  F++ L +D   + W L
Sbjct: 1268 SVFAFFMFNALFVLVVFLLQLNKDQIHVKWPL 1299


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 428 RGPESLPRSTPVPPSQFQPQL 490
           +GP  L +S P   ++ QP L
Sbjct: 169 KGPVDLSKSEPEKKTESQPML 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,575
Number of Sequences: 336
Number of extensions: 2845
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)