Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30467
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.24
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.24
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.55
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 0.72
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 28 0.72
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 0.95
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.95
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 28 0.95
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 1.3
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.7
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.7
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 26 2.9
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 2.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 2.9
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 3.8
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 6.7
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 6.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 6.7
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 8.9
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 8.9
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.24
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +2
Query: 341 SXTPLAPRSPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPPSQFQPQL 490
S P+ P+S P + P TP P P S P S P PPS P L
Sbjct: 1688 STPPVRPQSAAPPQMSAP--TPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 356 APRSPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPPSQFQPQLDGEY 502
AP S +P + ++ P P PP+ + P + S+ P P Y
Sbjct: 1514 APSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSS-APADNSMPHRSSPY 1561
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = +2
Query: 353 LAPRSPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPPSQFQPQL 490
+AP P+ S P R PP P P VPP P +
Sbjct: 1681 MAPAHPV---STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPM 1723
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.24
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 368 PIPNASATPFRTPXPLPPSWRGPESLPRSTPVPP 469
P+P + P P LPPS P SLP P P
Sbjct: 416 PVPTPPSLPPSAPPSLPPS--APPSLPMGAPAAP 447
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +2
Query: 350 PLAPRSPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPP 469
PL P +PI PLPP+ P P P P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Frame = +2
Query: 362 RSPIPNASATPFRTPXPLPPSWRGPESLP-----RSTPVPP 469
+ PI N S+ P P PP S+P RS P PP
Sbjct: 324 KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 359 PRSPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPP 469
P +P+ SA P P+PP G S P ++P P
Sbjct: 241 PPERVPSLSAP---APPPIPPPSNGTVSSPPNSPPRP 274
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 28.7 bits (61), Expect = 0.55
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 146 PLIVTRVTPGTPAGRDLVRGDIIAKIDDYDARDLXHEDAQNLFKNAPNQIK 298
P + P T +D + G ++K DD D H + + K+ PN ++
Sbjct: 1108 PHVNVSAVPNTGNLKDALEGSAVSKTDDVDNVVSGHSNVNGVSKSRPNIVE 1158
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 0.72
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 341 SXTPLAPRSPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPPSQFQP 484
S + P +P P + R P PP P P S P PS+ P
Sbjct: 119 SASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.72
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 278 NAPNQIKLVIQRDVEREXLX---GSXTPLA-PRSPIPNASATPFRTPXPLPPSWRGPESL 445
N PN+ + RD +E S PL P P+P+ A P +PP ++
Sbjct: 400 NPPNRNQAFSARDSRQEKTQPTNASPAPLVTPSLPVPSIPAVPGMEAMAMPPGVTSSIAV 459
Query: 446 PRSTPVP 466
P ++ +P
Sbjct: 460 PTTSSMP 466
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.9 bits (59), Expect = 0.95
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 210 ISPRTKSLPAGVPGVTLVTMSGVARSAPPTSRSPQLISRES 88
ISP+T G+ ++ V +SG+ R + + +P LI S
Sbjct: 3275 ISPQTSVFELGLDSISAVALSGLLRKSGYDNANPSLILTSS 3315
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 0.95
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 356 APRSPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPP 469
AP P+P+A A P P P P +P STP P
Sbjct: 1021 APPVPLPSADAPPIPVPSTAP-----PVPIPTSTPPVP 1053
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +2
Query: 356 APRSPIPNASAT---PFRTPXPLPPSWRGPESLPRSTPVPPSQ 475
AP P+P+ + P TP P+P S G S P P P S+
Sbjct: 1031 APPIPVPSTAPPVPIPTSTP-PVPKSSSGAPSAPPPVPAPSSE 1072
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 0.95
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 207 SPRTKSLPAGVPGVTLVTMSGVARSAPPTSRSPQLISRE 91
+P+ KSLP V L T + VAR S P+ I+R+
Sbjct: 149 NPKLKSLPMAVGKSVLCTANYVARKFGVRSAMPEFIARK 187
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 341 SXTPLAPRSPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPPSQFQP 484
S + + S I +S+TP P S ++P ++PVP + P
Sbjct: 81 SSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTP 128
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 338 GSXTPLAPRSPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPPSQFQPQL 490
GS T PR+ P + P PS+ P S P P PS+ P L
Sbjct: 73 GSSTGSTPRTASPAVGNQDYSKPSYSQPSYSQP-SQPPKEPALPSRGTPSL 122
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +2
Query: 392 PFRTPX---PLPPSWRGPESLPRSTPVP 466
PFR P P PP G S+PRST +P
Sbjct: 22 PFRQPSMNLPTPPHDDGLPSIPRSTALP 49
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 369 PYPTQAPHHSGLQXRCLRHGVXRNLCLAAHRCHLR 473
P+ T PHH L ++ V R CL + R
Sbjct: 42 PFATGRPHHGHLLASTIKDSVTRYACLKGYHVERR 76
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 374 PNASAT--PFRTPXPLPPSWRGPESLPRSTPVPPS 472
PNAS + P R P P+P P+ TP+P S
Sbjct: 581 PNASPSVIPPRVPTPVPGRTLSPKPTRIPTPIPSS 615
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 332 LXGSXTPLAP--RSPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPP 469
+ S +PL P + ++P P PP+ P P PVPP
Sbjct: 706 ISSSPSPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPP 753
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 3.8
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +2
Query: 251 HEDAQNLFKNAPNQ--IKLVIQRDVEREXLXGSXTPLAPRSPIPNASATPFRTPXPLPPS 424
+E+ +++ KN P K ++ V E L P P P+P P PLP
Sbjct: 74 YENLESISKNEPTSEASKPLLNELVPEEPLPRE--PPLPNEPVPEE---PLPGEPPLPDE 128
Query: 425 WRGPESLPRSTPVP 466
E LP P+P
Sbjct: 129 PVPEEPLPGEPPLP 142
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 347 TPLAPRSPIPNASATPFRTPXPLPPS-WRGPESLPRSTPVPPSQFQP 484
TP+AP+SP+ A+A+ + +PPS P ++ ST P ++P
Sbjct: 958 TPVAPQSPV--AAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKP 1002
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +2
Query: 206 DIIAKIDDYDARDLXHEDAQNLFKNAPNQIKLVIQRDVEREXLXGSXTPLAPRSP 370
+ I K D D D ED++++ N+P+ + + + R++E + + T +AP P
Sbjct: 2045 EFINKYPDIDI-DFEIEDSEDVHANSPSVLIVQLTRELEEDEEVDT-TVIAPYFP 2097
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 410 PLPPSWRGPESLPRSTPVPPSQ 475
PL W +S+P + P PPSQ
Sbjct: 108 PLNYYWPSYQSVPSAAPPPPSQ 129
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 371 IPNASATPFRTPXPLPPSWRGPESLPRSTPVPPS 472
I N+ +PF + P + P L STP PP+
Sbjct: 209 ISNSHISPFASGSFSPFATSSPNFLSTSTPAPPN 242
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 365 SPIPNASATPFRTPXPLPPSWRGPESLPRSTPVPPSQFQPQL 490
SP P+ +T L PS+ P++ P + + S PQL
Sbjct: 248 SPPPSIPLLGSQTNLQLAPSFAAPQAHPLPSHLSQSNVPPQL 289
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 353 LAPRSPIPNASATPFR-TPXPLPPSWRGPESLPRSTPVP 466
LAP S +P A +TP R T P PP + PR P
Sbjct: 400 LAPTSNVP-AYSTPARPTESPPPPPISSSSTTPRPDDKP 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,912
Number of Sequences: 5004
Number of extensions: 42612
Number of successful extensions: 157
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -