Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30465
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   1.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   1.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   4.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.6  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 155 LAGDVRSGSCYNV*SCNG 102
           + GD  SG  YN+ +C+G
Sbjct: 40  VCGDFSSGKHYNIFACDG 57


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 155 LAGDVRSGSCYNV*SCNG 102
           + GD  SG  YN+ +C+G
Sbjct: 40  VCGDFSSGKHYNIFACDG 57


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 155 LAGDVRSGSCYNV*SCNG 102
           + GD  SG  Y V SC G
Sbjct: 88  ICGDRASGKHYGVYSCEG 105


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 127 VTMFNRAMDIVFG 89
           V  F+RAMD+V G
Sbjct: 435 VGSFSRAMDVVLG 447


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 142 TSPANTXXIAILHFDND 192
           T PA+   IA L+ DND
Sbjct: 540 TLPASAVGIAWLYVDND 556


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,438
Number of Sequences: 336
Number of extensions: 1760
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)