Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30465
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family pr...    27   7.5  
At1g43330.1 68414.m04995 myb family protein-related contains sim...    27   9.9  

>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 566

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/33 (27%), Positives = 24/33 (72%)
 Frame = +2

Query: 212 KKQYKIVKTFIYNKFGMQEDTRQFLRTQ*IQQM 310
           +++ K+V+++ +N  G +E+T Q +R + +Q++
Sbjct: 97  EEESKVVRSYNFNNMGAEEETWQDMRKRVLQKL 129


>At1g43330.1 68414.m04995 myb family protein-related contains
           similarity to myb protein [Gallus gallus]
           gi|63628|emb|CAA32767
          Length = 118

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 383 FINVLV-YIKKSN*I*YL*STTNRLPFVVFIGY 288
           F+++L  Y KKSN   Y   T+ R+ F++F+ Y
Sbjct: 85  FLSILFNYNKKSNINSYFFGTSKRIKFIIFLFY 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,333,919
Number of Sequences: 28952
Number of extensions: 132915
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)