Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30461
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    25   0.30 
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   3.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   3.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   4.9  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 426 PAPSAVSACEHAN*HRNRKASAPRTPRHSISLISQ*GGVIPVGYKPSRSLSD 271
           P+P++ S C       +   +AP     S+  IS  GG +P    P +  SD
Sbjct: 172 PSPASDSECFDRRKFISALVNAPSVSPASLPSISPSGGFLPKWLPPLQGFSD 223


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 52  FFFSIFFYCKATGTI 8
           FF S FFY   TG I
Sbjct: 241 FFISTFFYFFTTGNI 255


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 52  FFFSIFFYCKATGTI 8
           FF S FFY   TG I
Sbjct: 237 FFISTFFYFFTTGNI 251


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 175 ARPNVAVSPHWPNADRSS 122
           ARP V  +P W  A  SS
Sbjct: 45  ARPGVVTTPRWGCARASS 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,955
Number of Sequences: 336
Number of extensions: 2158
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)