Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30461
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)         31   0.43 
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_57851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)                     27   9.2  
SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)                     27   9.2  

>SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)
          Length = 1652

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 256  LSIHLIT*RTTRLIPDRNYAPLLTDERNAVAGCAWGACFAVAMLVSVFT 402
            L ++L T  T RLI   +Y  +L  ER  +AGC  G  F +   VS+ +
Sbjct: 1376 LVLNLFTRETIRLISFLSYICILECERLCLAGCCEGCIFGLDKSVSLLS 1424


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 509 PLPHPRQAPHFRHH-LHCPRLPGLSGPGVPRP 417
           P PHP  AP+  HH   C   P +   GVP P
Sbjct: 579 PPPHPLSAPYRLHHGTSCDAPPDMPRHGVPPP 610


>SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = -3

Query: 178 TARPNVAV-----SPHWPNADRSSRLHFIN 104
           T  PNV++     +PHWPN  + S L  +N
Sbjct: 231 TQLPNVSILDLTGNPHWPNVSQISTLRMLN 260


>SB_57851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = -3

Query: 178 TARPNVAV-----SPHWPNADRSSRLHFIN 104
           T  PNV++     +PHWPN  + S L  +N
Sbjct: 18  TQLPNVSILDLTGNPHWPNVSQISTLRMLN 47


>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 948

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 491 QAPHFRHHLHCPRLPGLSG--PGVPRPQQ*ALVNTLTNIATAKQAPHAHPATAFLSS 327
           Q+P   +H  C    G  G  PG     Q     +LTNI+T  Q PH    ++ L++
Sbjct: 590 QSPSHLNHQECQHCDGPDGVAPGNTCTTQ----TSLTNISTTNQPPHISVVSSSLAA 642


>SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)
          Length = 428

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 488 APHFRHHLHCPRLPG 444
           AP+FRHH   PR PG
Sbjct: 383 APYFRHHRVIPRRPG 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,803,493
Number of Sequences: 59808
Number of extensions: 271409
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)