BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV30461 (516 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 27 6.0 AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 27 6.0 AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 27 6.0 AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 27 6.0 AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 27 6.0 AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 27 6.0 AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 27 6.0 AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 27 6.0 AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 27 6.0 >AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,5-trisphosphate receptorprotein. Length = 2857 Score = 27.5 bits (58), Expect = 6.0 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 234 PERIVAPSINTFNHLTND*AYTRPELRPLID 326 P+++ PSI+ + L+ND ++ P+L P D Sbjct: 1994 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2024 >AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,5-trisphosphate receptorprotein. Length = 2836 Score = 27.5 bits (58), Expect = 6.0 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 234 PERIVAPSINTFNHLTND*AYTRPELRPLID 326 P+++ PSI+ + L+ND ++ P+L P D Sbjct: 1973 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2003 >AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,5-trisphosphate receptorprotein. Length = 2892 Score = 27.5 bits (58), Expect = 6.0 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 234 PERIVAPSINTFNHLTND*AYTRPELRPLID 326 P+++ PSI+ + L+ND ++ P+L P D Sbjct: 2029 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2059 >AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,5-trisphosphate receptorprotein. Length = 2846 Score = 27.5 bits (58), Expect = 6.0 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 234 PERIVAPSINTFNHLTND*AYTRPELRPLID 326 P+++ PSI+ + L+ND ++ P+L P D Sbjct: 1983 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2013 >AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,5-trisphosphate receptorprotein. Length = 2846 Score = 27.5 bits (58), Expect = 6.0 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 234 PERIVAPSINTFNHLTND*AYTRPELRPLID 326 P+++ PSI+ + L+ND ++ P+L P D Sbjct: 1983 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2013 >AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol triphosphate receptorprotein 1, isoform e protein. Length = 2857 Score = 27.5 bits (58), Expect = 6.0 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 234 PERIVAPSINTFNHLTND*AYTRPELRPLID 326 P+++ PSI+ + L+ND ++ P+L P D Sbjct: 1994 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2024 >AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol triphosphate receptorprotein 1, isoform f protein. Length = 2846 Score = 27.5 bits (58), Expect = 6.0 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 234 PERIVAPSINTFNHLTND*AYTRPELRPLID 326 P+++ PSI+ + L+ND ++ P+L P D Sbjct: 1983 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2013 >AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol triphosphate receptorprotein 1, isoform d protein. Length = 2836 Score = 27.5 bits (58), Expect = 6.0 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 234 PERIVAPSINTFNHLTND*AYTRPELRPLID 326 P+++ PSI+ + L+ND ++ P+L P D Sbjct: 1973 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2003 >AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol triphosphate receptorprotein 1, isoform a protein. Length = 2892 Score = 27.5 bits (58), Expect = 6.0 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 234 PERIVAPSINTFNHLTND*AYTRPELRPLID 326 P+++ PSI+ + L+ND ++ P+L P D Sbjct: 2029 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2059 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,763,036 Number of Sequences: 27780 Number of extensions: 202615 Number of successful extensions: 561 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 559 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 996506972 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -