Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30461
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   10.0 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   10.0 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   10.0 

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 192 RPYSEHKTTDGVIEPERIVAPSI 260
           RP S H T D  IE      PS+
Sbjct: 656 RPISCHTTPDSFIEAPNKTLPSL 678


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 201 SEHKTTDGVIEPERIVAPSINTFN 272
           SEH +T   +   +I  P+  +FN
Sbjct: 286 SEHTSTPNFLSEAKIFPPTPGSFN 309


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 386  NIATAKQAPHAHPATAFLS 330
            ++ T  QAP   PA  FLS
Sbjct: 1491 SVRTQGQAPGIPPAATFLS 1509


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 386  NIATAKQAPHAHPATAFLS 330
            ++ T  QAP   PA  FLS
Sbjct: 1487 SVRTQGQAPGIPPAATFLS 1505


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 340 HFSHQSIRGRNSGR 299
           H+ HQ++  +NSG+
Sbjct: 280 HYEHQNVFVKNSGQ 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,903
Number of Sequences: 438
Number of extensions: 2613
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)