Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30460
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    27   2.2  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   2.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   3.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   5.1  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   6.7  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    25   6.7  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 239 PMDFSNARGRAEPLPTATYVQRFRSIDL*IQDEPIKM 129
           P  F N++  +EPL    Y+ R   + L   ++P+K+
Sbjct: 358 PNPFYNSKEESEPLAAHGYIYRDVDLSLETDEKPVKL 394


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +1

Query: 241 DDYHSPSGGPCARLPTRAIKKFPSFYRLENLHA------YQDRHVYFNF 369
           +DY +P+   CARLP   +K F     L+++        + DR+VY NF
Sbjct: 267 EDYDTPTWLSCARLP--LLKAFKDVIGLKDVWCDSLQTLHGDRYVYQNF 313


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 335  TRIRIAMFISIFAPIKIKCLSMFFFYCSSFFLVP 436
            T   I + I   AP+ +  +  FFF+C    L P
Sbjct: 1473 TNAFIRLIIMSVAPLVLSAIIAFFFFCLGIMLRP 1506


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 404 FFYCSSFFLVPNE 442
           F  CSSFF++PN+
Sbjct: 915 FINCSSFFIIPND 927


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 361 NKHGDPDTRVSFQVYKMMETFL 296
           NK+G+P     FQ+ + ME FL
Sbjct: 45  NKYGEPYLITEFQLQRCMEKFL 66


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 484 FYIFNYHTDF 455
           FY+FNYH DF
Sbjct: 18  FYLFNYHFDF 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,541
Number of Sequences: 5004
Number of extensions: 32604
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)