Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30460
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0248 + 23598461-23598652,23599600-23599744,23599816-235999...    30   0.96 
01_06_1137 - 34801750-34801955,34802586-34802856,34802961-348031...    29   2.9  

>05_05_0248 +
           23598461-23598652,23599600-23599744,23599816-23599966,
           23600049-23600174,23600253-23600333,23600706-23600898,
           23600990-23601260,23601807-23602000,23602086-23602105,
           23602352-23602394
          Length = 471

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +2

Query: 266 GRVLVYLQGQ*KSFHHFIDLKTYTRIRIAMFISIFAPIKIKCLSMFFFYCSSFFLVPNEL 445
           G+VL Y   Q  ++  F DLK YT +      ++   IKI    M   Y  +   VP ++
Sbjct: 195 GKVLTY-SAQDSTYKVF-DLKNYTLLYSISDKNV-QEIKISPGIMLLIYTRTSSSVPLKI 251

Query: 446 *SVEIGVIVKNIKHSFY*SK 505
            S+E G ++K+  H  + +K
Sbjct: 252 LSIEDGTVLKSFNHLLHRNK 271


>01_06_1137 -
           34801750-34801955,34802586-34802856,34802961-34803153,
           34803754-34803834,34803914-34804039,34804119-34804269,
           34804346-34804490,34805088-34805279
          Length = 454

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 24/80 (30%), Positives = 38/80 (47%)
 Frame = +2

Query: 266 GRVLVYLQGQ*KSFHHFIDLKTYTRIRIAMFISIFAPIKIKCLSMFFFYCSSFFLVPNEL 445
           G+VL Y   Q  ++  F DLK YT +      ++   IKI    M   Y      +P ++
Sbjct: 195 GKVLTY-SAQDSTYKVF-DLKNYTLLYTISDKNV-QEIKISPGIMLLIYSRKKGCIPLDI 251

Query: 446 *SVEIGVIVKNIKHSFY*SK 505
            S+E G  +K+ KH  + +K
Sbjct: 252 LSIEDGKRLKSFKHLLHRNK 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,966,447
Number of Sequences: 37544
Number of extensions: 209725
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)