Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30460
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    27   6.0  
Z81575-3|CAB04629.2|  313|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical
           protein W09C5.5 protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 235 MGDDYHSPSGGPCARLPTRAIKKFPS 312
           +G+DYH+ SGGP  ++P R++   PS
Sbjct: 366 VGEDYHAFSGGPPKKIP-RSMSVRPS 390


>AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical
           protein C08F1.5b protein.
          Length = 905

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 305 NFFIALVGRRAHGPPDGEW*SSPMDFSNARGR 210
           N ++ ++ +  HG PDG++ S P +F +   R
Sbjct: 285 NCWLGILPKERHGQPDGKFNSFPSEFDHRNTR 316


>AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical
           protein C08F1.5a protein.
          Length = 828

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 305 NFFIALVGRRAHGPPDGEW*SSPMDFSNARGR 210
           N ++ ++ +  HG PDG++ S P +F +   R
Sbjct: 208 NCWLGILPKERHGQPDGKFNSFPSEFDHRNTR 239


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 323 LKTYTRIRIAMFISIFAPIKIKCLSMFFFYCSSFFLVPNEL*SVEIGVIVKNIKHSFY 496
           LK    ++I  F  IF   K     +F F   +FF+  N + +V   + V N    F+
Sbjct: 37  LKKKLILKIRFFFKIFFADKTMNFLIFIFDALTFFISKNTVDTVNFAIFVPNFLIVFF 94


>Z81575-3|CAB04629.2|  313|Caenorhabditis elegans Hypothetical
           protein R08H2.3 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 347 IAMFISIFAPIKIKCLSMFFFYCSSFF 427
           IAM I +F P+ +  + + +  C++FF
Sbjct: 240 IAMCIQVFIPVVVVIIPVVYIICANFF 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,893,159
Number of Sequences: 27780
Number of extensions: 189431
Number of successful extensions: 397
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)