BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV30460 (516 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g18380.1 68417.m02728 F-box family protein contains F-box dom... 28 4.3 At3g54190.1 68416.m05990 expressed protein GTP-binding regulator... 28 4.3 >At4g18380.1 68417.m02728 F-box family protein contains F-box domain Pfam:PF00646 Length = 380 Score = 27.9 bits (59), Expect = 4.3 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +1 Query: 199 SGSALPLALLKSMGDDYHSPSGGPCARLPTRAIKKF 306 SGS+ P +LL S GDD GG PT+ +K F Sbjct: 124 SGSS-PSSLLISGGDDGEIEQGGVTHHSPTQVLKNF 158 >At3g54190.1 68416.m05990 expressed protein GTP-binding regulatory protein beta chain, Dictyostelium discoideum, PIR:A47370 Length = 467 Score = 27.9 bits (59), Expect = 4.3 Identities = 22/80 (27%), Positives = 37/80 (46%) Frame = +2 Query: 266 GRVLVYLQGQ*KSFHHFIDLKTYTRIRIAMFISIFAPIKIKCLSMFFFYCSSFFLVPNEL 445 G+VL Y S + DLK YT + ++ IKI M + + VP ++ Sbjct: 196 GKVLTYSAQD--SVYKVFDLKNYTMLYSISDKNV-QEIKISPGIMLLIFKRAASHVPLKI 252 Query: 446 *SVEIGVIVKNIKHSFY*SK 505 S+E G ++K+ H + +K Sbjct: 253 LSIEDGTVLKSFNHLLHRNK 272 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,029,188 Number of Sequences: 28952 Number of extensions: 167880 Number of successful extensions: 307 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 306 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 307 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -