Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30457
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    92   4e-20
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    76   4e-15
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   1.7  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   2.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   3.8  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   3.8  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   3.8  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   6.7  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   6.7  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   8.9  

>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 92.3 bits (219), Expect = 4e-20
 Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
 Frame = +2

Query: 161 ALARLEVELEKLISTAPET-RRPQLEKEFKGFKTLFSRFLAE--QGPSVTWEKIEKLPEG 331
           A + ++ EL  L ST  +   +   +KE   F +LFSR+L E  +G  + W+ +E     
Sbjct: 29  AASTMKNELNHLASTVKDPLAKKAFQKEMDNFFSLFSRYLQEDARGSEINWDLVESPKPE 88

Query: 332 AVIDYNSLSTPTTDNVHHMLDKLVVVKLNGGLGTSMGCKGPKSVIQVRNDLTFLDLTVQQ 511
            V++Y+++ T         L+KL V+KLNGGLGT+MGC GPKS+I+VR+  +FLDL+V+Q
Sbjct: 89  QVVEYDTI-TEAGGLSRDYLNKLAVLKLNGGLGTTMGCVGPKSIIEVRDGNSFLDLSVRQ 147

Query: 512 I 514
           I
Sbjct: 148 I 148


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 75.8 bits (178), Expect = 4e-15
 Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
 Frame = +2

Query: 134 DFKEATKRDALARLEVELEKLISTAPETRRPQLEKEFKGFKTLFSRFLAE--QGPSVTWE 307
           DF       + + ++ EL+KL+  +  + +     +   F  L+ R+L    +G    W+
Sbjct: 15  DFDSVAVSISASTMKNELDKLVLNSRVSDKKTFGIQMDNFFALYRRYLLHTVKGYECDWD 74

Query: 308 KIEKLPEGAVIDYNSLSTPTTDNVHHMLDKLVVVKLNGGLGTSMGCKGPKSVIQVRNDLT 487
            I  L    +IDY  L  P   N    L++L VVKLNGG+G ++G   PK++I+VR++ +
Sbjct: 75  SIRPLGPEDMIDYGDL--PLCKNAGKYLNRLAVVKLNGGMGNALGVNYPKAMIEVRDNQS 132

Query: 488 FLDLTVQQI 514
           FLDL+++QI
Sbjct: 133 FLDLSIRQI 141


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
 Frame = +2

Query: 101 AVTSGTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQL----EKEFKGFKTLFS 268
           AVT   PS   +  E   + +LA  E E E L  +  +T + +     EKE +  K LFS
Sbjct: 388 AVTEFRPSELFELNENKSQRSLAE-EYEEEFLKKSNADTYKSEADKKKEKEHEEIKALFS 446

Query: 269 RFLAEQGPSVTWEKIEKLPEGAVIDYNSLSTPTTDNV 379
                     +W  +   PE  V   ++  T   ++V
Sbjct: 447 EVSRTLDSLASWHYVPPPPESTVEIVSNAPTLAMEDV 483


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 464 SRIWGPYSPWMYPGLR 417
           S +WGPY P +Y G+R
Sbjct: 41  SFLWGPYRPNLYVGIR 56


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 298 NMGENREASRRSCNRL*QSVH 360
           N+G N  AS R CNR+ ++++
Sbjct: 291 NLGPNYRASTRKCNRIKEAIN 311


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 375 LSVVGVDRLL*SITAPSGSFSIFSHVTDGPCSAKNLLKSVLKPLNSFSSCGRLVSGA 205
           L+ VG+      +T P G F +   + DGP   K  L   LK  ++ S     + GA
Sbjct: 110 LAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 166


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 375 LSVVGVDRLL*SITAPSGSFSIFSHVTDGPCSAKNLLKSVLKPLNSFSSCGRLVSGA 205
           L+ VG+      +T P G F +   + DGP   K  L   LK  ++ S     + GA
Sbjct: 110 LAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 166


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 323 PEGAVIDYNSLSTPTTDNVHHMLDKLVVVKLNGG 424
           P+G  ID N+L+T T +N+ ++++   +   N G
Sbjct: 55  PQGDPIDKNNLNTNTENNLPNIVNFQNISSANSG 88


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 502 GKIKEGQVIPNLDHGFGALTAHGCTQASVKLHHHQLVE-HMVHVVRRW 362
           GK   GQV+  +D+  G L A    +   + H   LVE  ++  +R W
Sbjct: 706 GKGSFGQVLRCIDYETGKLVALKIIRNKKRFHMQALVETKILQKIREW 753


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +1

Query: 28  YQSLLSRLLHKEMKPETNDS 87
           ++++LSRL +KE+ P T+++
Sbjct: 346 WETMLSRLYNKELTPSTDEN 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,372
Number of Sequences: 5004
Number of extensions: 42321
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)