Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30457
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                138   2e-33
SB_53807| Best HMM Match : MCM (HMM E-Value=0)                         29   3.0  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     29   3.0  
SB_14568| Best HMM Match : Col_cuticle_N (HMM E-Value=6.1)             28   4.0  
SB_2108| Best HMM Match : DUF702 (HMM E-Value=4.7)                     28   5.3  
SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)               27   6.9  
SB_35062| Best HMM Match : IATP (HMM E-Value=1.7)                      27   9.2  
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)        27   9.2  
SB_46188| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-16)                 27   9.2  
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 27   9.2  

>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score =  138 bits (335), Expect = 2e-33
 Identities = 65/128 (50%), Positives = 86/128 (67%)
 Frame = +2

Query: 131 RDFKEATKRDALARLEVELEKLISTAPETRRPQLEKEFKGFKTLFSRFLAEQGPSVTWEK 310
           + FK  +++DA  R+E E+ KLI  AP  ++    KE   FK LF R+L E GPSV WEK
Sbjct: 175 QQFKSLSRKDAFERMETEINKLIEFAPAPQKDLASKEMNNFKGLFKRYLQETGPSVVWEK 234

Query: 311 IEKLPEGAVIDYNSLSTPTTDNVHHMLDKLVVVKLNGGLGTSMGCKGPKSVIQVRNDLTF 490
           I   P+G V++Y+ +S     ++   LDKLVV+KLNGGLGT+MG  GPKS+I V  +LTF
Sbjct: 235 IHPPPKGLVVNYDEVSHAEPADIKAALDKLVVIKLNGGLGTTMGLVGPKSLISVTQELTF 294

Query: 491 LDLTVQQI 514
           LDL +QQI
Sbjct: 295 LDLNIQQI 302


>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
          Length = 789

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 224 PQLEKEFKGFKTLFSRFLAEQGPSVTWEKIEKLPE----GAVIDYNSLS 358
           P+LE + + FK     F+ +QG SV  EKI ++ E      VIDYN L+
Sbjct: 113 PRLEIKNR-FKQFLRTFVDDQGHSVYREKIRQMCEANKQSLVIDYNILA 160


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +2

Query: 74  KPTTPIKRFAVTSGTPSGSRDFKEATKRDALARLEVELEKLISTAPETRRPQLEK 238
           + T+P+K  +V SG PS SRD   A       RLE + E L S +   +R + +K
Sbjct: 104 RSTSPVKTSSVLSGQPS-SRD-SPALLNVLFERLEQQAEALDSLSGTVKRLEKDK 156


>SB_14568| Best HMM Match : Col_cuticle_N (HMM E-Value=6.1)
          Length = 70

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 194 ASPAPPPVER-GHHVWWPP 141
           ASP PPPV+  GH   WPP
Sbjct: 46  ASPPPPPVQIIGHTFVWPP 64


>SB_2108| Best HMM Match : DUF702 (HMM E-Value=4.7)
          Length = 297

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -3

Query: 448 LTAHGCTQASVKLHHHQLVEHMVHVVRR--WRGQTVIIDYSSFWKLLDFLPC 299
           L AH     +V LH      H  H  R    + + + I  S+ W L +FL C
Sbjct: 100 LRAHPTVPITVSLHKQTTTRHS-HSARNSSLQAEVLAIAQSNLWSLAEFLAC 150


>SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 320 LPEGAVIDYNSLSTPTTDNVHH 385
           +PEGA +  N L+ P+  N HH
Sbjct: 1   MPEGAEVFSNPLAPPSASNAHH 22


>SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)
          Length = 928

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 356 TDCYNRLQLLLEASRFSPMLPTDPVQP 276
           TDC  RL  + ++S  SP LP+ P  P
Sbjct: 406 TDCLQRLLAIRQSSAQSPSLPSRPGPP 432


>SB_35062| Best HMM Match : IATP (HMM E-Value=1.7)
          Length = 223

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
 Frame = +2

Query: 68  SQKPTTPIKRFAVTSGTPSGSRDFKEATKR--------------DALARLEVELEKLIST 205
           S  P TP+    +   +P GS  F  A ++              D +  LE E  KL S 
Sbjct: 107 SSTPKTPVSSSRIMGSSPPGSAKFTRAQEKAELQHLNDRLATYIDRVKNLEQENSKLRSE 166

Query: 206 APETRRPQLEKEFKGFKTLFSRFLAE 283
              +R+  +E+E    K+L+   LA+
Sbjct: 167 VTVSRK-TVEREVDSMKSLYETELAD 191


>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
          Length = 979

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +1

Query: 169  STGGGAGEAHLHGPGNQASAARERVQRLQDALQQILG*TGSVGNMGENREASRRS-CNRL 345
            S  G AG+A       +AS   E  +  ++ +    G  G     GE+ EAS  S     
Sbjct: 762  SEAGEAGKAGEASEAGEASEVGEASEAGENGVASEAGEDGEASEAGEDGEASEASEAGEA 821

Query: 346  *QSVHANDGQRAPYARQVG-GGEA 414
             ++  A +   A  A + G  GEA
Sbjct: 822  SEASEAGEASEASEAGEAGEAGEA 845


>SB_46188| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-16)
          Length = 326

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -1

Query: 504 TVRSRKVRSFRTWITDLGPLQPMDVPRPPLSFTTTNLSSIWCTLSVVGVDRLL*SITAPS 325
           TV+  KV     +I  L P  P  +  PP  FT+  + S  C + +V +   L       
Sbjct: 141 TVKVVKVVMIIIFIAALFPAAPQTLELPPSHFTSGMVISGICLVFIVIISSYLAIFFRVL 200

Query: 324 GSFSIFSHVTD 292
                FSH++D
Sbjct: 201 KQSRTFSHLSD 211


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 229  ARERVQRLQDALQQILG*TGSVGNMGENREASR 327
            A ERV++L+ +LQ+  G   + G M   R ASR
Sbjct: 1942 AEERVEQLESSLQKARGRARTSGVMSGGRAASR 1974


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,701,626
Number of Sequences: 59808
Number of extensions: 350799
Number of successful extensions: 1202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)