Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30455
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    28   0.95 
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   6.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.7  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   6.7  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   8.9  

>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 286 QXFLKTSSKCTVWAWLLQFRFSEHLNRPSPLRQFPKVRNAASNFREL 146
           + F     KC +W   LQ +  E+ +    L+ F     +  NF+EL
Sbjct: 144 ETFFSYLRKCNMWDLKLQAKAYEYESIDDALKNFESQSKSTDNFKEL 190


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 128 LVHCEGHN-RCNLTKVISQHTGSENRYQDSLPHHCNK 21
           LV C   N + +    +S  +  +NRY D +P++C +
Sbjct: 275 LVSCSDRNSQWSTVDSLSNTSYKKNRYTDIVPYNCTR 311


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 189  CLKGLGRFKCSENRN*RSQAQTV--HFDEVFKKXCDXSAQLKRL 314
            C+ G+    CSEN N RS A +   H+    K   + +  + +L
Sbjct: 1104 CINGIFESLCSENENTRSNALSCIDHYLNAHKMLLNTTLDISKL 1147


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 261 FDEVFKKXCDXSAQLKRLYQLGAAG 335
           +DE FKK  D   ++KR Y +G  G
Sbjct: 183 WDERFKKHPDVGDRMKRWYPVGRLG 207


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
          reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 85 SSANTPAAKIVIKTVFH 35
          SS +TPA K+  KT+FH
Sbjct: 2  SSIDTPANKLQAKTLFH 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,477
Number of Sequences: 5004
Number of extensions: 28698
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)