Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30455
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29379-4|AAF99980.2|  415|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U12964-12|AAA91216.1|  362|Caenorhabditis elegans Hypothetical p...    29   2.6  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   6.0  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   6.0  
Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U29379-4|AAF99980.2|  415|Caenorhabditis elegans Hypothetical
           protein K05B2.4 protein.
          Length = 415

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 298 ALXSQXFLKTSSKCTVWAWLLQFRFSEHLNRPSPLRQFPK 179
           A   +  L   S+  VW   +QF FSEHL  P+PL  + +
Sbjct: 372 AYGGETSLHGKSQFEVWEKTVQF-FSEHLGAPTPLPDYSR 410


>U12964-12|AAA91216.1|  362|Caenorhabditis elegans Hypothetical
           protein F26F4.1 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -3

Query: 202 SPLRQFPKVRNAASNFRELCLQHCSWCIAKVTTAVI*LKSSANTPAAKIVIKTVFHIIVT 23
           S    F ++ N A N     L + + C   V  A+   K  A TP  K      FH ++ 
Sbjct: 93  SKFANFAEIENEAGNSEPEQLLNTARCKC-VDLAIQWTKQKATTPIEKKYGSAAFHTVLA 151

Query: 22  RKLV 11
           +KLV
Sbjct: 152 KKLV 155


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 145  KVP*SWKQHCVPLETASRDW-XDLN 216
            +VP  WK++ VP E    DW  DLN
Sbjct: 4396 EVPTGWKRYTVPREVTVMDWMTDLN 4420


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 145  KVP*SWKQHCVPLETASRDW-XDLN 216
            +VP  WK++ VP E    DW  DLN
Sbjct: 4396 EVPTGWKRYTVPREVTVMDWMTDLN 4420


>Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical
           protein VZK822L.2 protein.
          Length = 83

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 197 LEAVSKGTQCCFQLQGTLSSALFLVHCEGHNRCNLTKVISQHTGSENRYQDSLP 36
           +++  +  QCC    GTL   L  VH   HN     ++ SQ+  +++ ++ + P
Sbjct: 28  IQSTLRPPQCCHNSSGTLIIGLPQVH--PHNSFQYVRLESQNVETDSWHKTAFP 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,101,990
Number of Sequences: 27780
Number of extensions: 174853
Number of successful extensions: 328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)