Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30454
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   1.3  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   3.8  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   3.8  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   5.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   5.1  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   5.1  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.7  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   6.7  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    25   6.7  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    25   8.9  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   8.9  

>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 228 TCEMEGATFFYPDDKFEFDAVTTYWNTTQPFEWISIGISSQTAKG--VFETVDGVSIMDV 401
           TC  EG    +        AV ++   + PF  I++   +Q A G  +  ++  V + DV
Sbjct: 72  TCGSEGEIHLWDIRSQAKSAVRSWTQQSTPFTCIALNKKNQFATGSELTRSLASVQLWDV 131

Query: 402 YNKWK-PGEPNDSHNNE 449
            ++ K   + ND+HN++
Sbjct: 132 RSEQKLIRQWNDAHNDD 148


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 129 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 224
           E     KDYT  E  + F K   +YKK  D K
Sbjct: 5   EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 175 RAFTKFTRYIRNGWTLRRL-AKWRGLLSFTLMTSLNSML*PLIGTRHNPSN 324
           +A+TK   +IRNG +     ++W+GL + TL  S  S +       H PSN
Sbjct: 435 KAWTK--HFIRNGESAAYAWSQWKGLYNLTLNMSYISFVMAAWKLYHLPSN 483


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +3

Query: 132 NKFFRKDYTYIESTESF--YKIHTLYKKWVDAKKTCEMEGATFFYPDDKFEFDAVTTYWN 305
           +KF +  Y +   +  F  Y++H       DA+      G+  +   D  + + VT+Y  
Sbjct: 43  SKFSKFVYAFASISSGFLHYQLHRAAAPKYDAR------GSLLYVGQDLLQ-EGVTSYMV 95

Query: 306 TTQPFEWISIGISSQTAKGVFETVDGVSIMDVY 404
               F WI I +++ T+  VF     V I  VY
Sbjct: 96  DYMYFSWILIFLAALTSVKVFAFYLLVPIFVVY 128


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
            Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = +3

Query: 138  FFRKDYTYIESTESFYKIHTLYKKW-VDAKKTCEMEGATFFYPDDKFEFDAVTTYWNTTQ 314
            F   D   +   E   +I T +K W +  K+      + FF P+D  E +     +    
Sbjct: 840  FSDDDLKLMNEEEIMEQIET-FKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNNLFEDWY 898

Query: 315  PFEWISIGISSQTAKGVFETVDGVS 389
            P      G  S   KG+ ET D +S
Sbjct: 899  PNRARDPGTLSHLVKGLKETADHLS 923


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 189 FCKSSQLIRYTYSPYGKTYFPVVH 118
           FCK S+  R TY    K Y+  +H
Sbjct: 471 FCKLSRTWRSTYEQCFKNYYETIH 494


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 420 PASICYTRPLWRHHQ 376
           P SICY + LWR ++
Sbjct: 946 PGSICYNQRLWRRNR 960


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 353 RLR*DPDTDPFEGLCRVPISGHSIEFKLVIRVK 255
           RL  +P  D F G C  P  G  ++FK+   V+
Sbjct: 182 RLSGNPIYDAFMGACLNPRLGKLLDFKMFFEVR 214


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 106 RNSFMDNGKISFSVRTIRISNQLR 177
           +NS  DNG +  +V TI + N LR
Sbjct: 84  KNSDTDNGLLKSAVETITLENGLR 107


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 304 TRHNPSNGSVSGSHRRRPKESSKLLMVSP*WTCI 405
           ++ N S+ +V  S    PK   KL+ V P W C+
Sbjct: 147 SKTNFSSSTVPVSELPLPKNLEKLIDVHPSWFCL 180


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 180 FYKIHTLYKKWVDAKKTCEMEGATFFYPDDKF 275
           F++IH  + +  D  KT   + A   Y D K+
Sbjct: 561 FFRIHDYWSRRFDTYKTLTSKVALLLYSDRKY 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,150
Number of Sequences: 5004
Number of extensions: 43715
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)