Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30454
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    31   0.73 
05_03_0358 - 12923593-12923638,12924195-12924319,12924407-129244...    27   6.8  
02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413...    27   6.8  
01_06_0790 + 32019972-32020101,32020461-32020657,32020790-320209...    27   6.8  
08_01_0573 - 5101268-5101918                                           27   8.9  

>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 273 FEFDAVTTYWNTTQPFEWISIGISSQTAKGVFETVDGVSIM 395
           F F+ VT    TT+ ++W+   I++QT  G    V   SIM
Sbjct: 258 FLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAASIM 298


>05_03_0358 -
           12923593-12923638,12924195-12924319,12924407-12924469,
           12925371-12925495,12925596-12925653,12925830-12926073,
           12926162-12926223,12926665-12926721
          Length = 259

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 343 EIPILIHSKGCVVFQ*VVTASNSN 272
           E  +L+H KGC+V   ++ A+ SN
Sbjct: 24  ESQLLLHGKGCIVADAIIFAAKSN 47


>02_01_0562 +
           4129852-4130235,4130355-4130453,4131046-4131146,
           4131229-4131300,4131712-4131802,4132005-4132085,
           4132263-4132331,4132634-4132690,4132776-4132898,
           4133000-4133038,4133255-4133380
          Length = 413

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 338 PDTDPFEGLCRVPISGHSIEFKLVIRVKESSPLHFASL 225
           P + PFE L    + GH   + + I      P+H +SL
Sbjct: 114 PGSLPFEKLWEKFLQGHEDRYSIYIHASRERPVHSSSL 151


>01_06_0790 +
           32019972-32020101,32020461-32020657,32020790-32020993,
           32021444-32021645,32021798-32021886,32022567-32022662,
           32022710-32022814,32023516-32023556,32023685-32023777,
           32023853-32023970,32024488-32024578,32024693-32024766,
           32025008-32025187,32025643-32025681
          Length = 552

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 351 TAKGVFETVDGV---SIMDVYNKWKPGEPNDSHNNEDCVVIH 467
           T KG+   V+ +   S+  ++ +W+   PN+   N++ + I+
Sbjct: 267 THKGIVSQVEFMPKFSVRGIWQRWRESYPNNGSKNDEAITIY 308


>08_01_0573 - 5101268-5101918
          Length = 216

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 205 RNGWTLRRLAKWRGLLSFTLMTSLNSML*PLIGTRHNPSNGSVSG 339
           R GWT   +A WR  ++      ++++   ++G +H    G   G
Sbjct: 94  RRGWTQHGVAGWRRAVAEAARGVMDNLQAHVVGAKHRVGGGLACG 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,933,585
Number of Sequences: 37544
Number of extensions: 258112
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)