Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30454
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31350.1 68417.m04446 expressed protein contains Pfam profile...    31   0.61 
At2g19160.1 68415.m02236 expressed protein contains Pfam profile...    28   4.3  
At2g26700.1 68415.m03203 protein kinase family protein contains ...    27   7.5  
At3g55360.1 68416.m06148 3-oxo-5-alpha-steroid 4-dehydrogenase f...    27   9.9  
At2g39370.1 68415.m04832 expressed protein                             27   9.9  
At2g34880.1 68415.m04282 transcription factor jumonji (jmj) fami...    27   9.9  

>At4g31350.1 68417.m04446 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 711

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 338 PDTDPFEGLCRVPISGHSIEFKLVIRVKESSPLHFAS 228
           P T PFE L  +   GH  +F + +   + SP+H +S
Sbjct: 463 PGTLPFEPLWEMFFRGHENKFSVYVHASKKSPVHTSS 499


>At2g19160.1 68415.m02236 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 394

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 338 PDTDPFEGLCRVPISGHSIEFKLVIRVKESSPLH 237
           P T PFE L  +   GH  +F + I   + +P+H
Sbjct: 114 PGTLPFEKLWDLFFQGHEGKFSVYIHASKDTPVH 147


>At2g26700.1 68415.m03203 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 525

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +3

Query: 237 MEGATFFYPDDKFEFDAVTTYWNTTQPFEWISIGISSQTAKGVFETVDGVSI--MDVYNK 410
           M  ++ FY D++ ++++ T   ++++   W+S   SS TA     ++  +S   ++ YN+
Sbjct: 1   MANSSIFYKDNESDYESSTVGPDSSRRTSWLS---SSFTASPSCSSISHLSNHGLNSYNQ 57

Query: 411 WKPGEPN 431
            KP + N
Sbjct: 58  SKPHKAN 64


>At3g55360.1 68416.m06148 3-oxo-5-alpha-steroid 4-dehydrogenase
           family protein / steroid 5-alpha-reductase family
           protein similar to synaptic glycoprotein SC2 spliced
           variant from Homo sapiens [EMBL:AF038958], SC2 from
           Rattus sp. [gi:256994]; contains Pfam
           3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
          Length = 310

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 273 FEFDAVTTYWNTTQPFEWISIGISSQTAKG 362
           F F+ VT    TT+ ++W+   I++QT  G
Sbjct: 235 FLFNIVTCANYTTEIYQWLGFNIATQTIAG 264


>At2g39370.1 68415.m04832 expressed protein 
          Length = 328

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 319 SNGSVSGSHRR 351
           SNGSVSGSHRR
Sbjct: 224 SNGSVSGSHRR 234


>At2g34880.1 68415.m04282 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 806

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 196 RYIRNGWTLRRLAKWRG-LLSF 258
           +YI +GW L  LA+ +G LLSF
Sbjct: 261 KYISSGWNLNNLARLQGSLLSF 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,790,111
Number of Sequences: 28952
Number of extensions: 217565
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)